myRT

myRT report for GCA_003500135.1_ASM350013v1

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Seq: DNTA01000207.1 TPA_asm: Cytophagales bacterium isolate UBA10427 contig_3649, whole genome shotgun sequence (4514 bp)
Overview 1 RT 1: 475-3240 bp Neighborhood of RT #1 [475, 3305] RVT-Retrons HTH_XRE 5-nucleotidase Feature: gene Location: 475-693 bp Feature: gene Location: 1036-1920 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1213-1732 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 21 3-1 732 bp Feature: gene Location: 2145-2342 bp Feature: domain Description: HTH_XRE Location: 2148-2319 bp Feature: domain Description: HTH_XRE Location: 21 48-231 9 bp Feature: gene Location: 2343-3305 bp Feature: domain Description: 5-nucleotidase Location: 2457-3240 bp Feature: domain Description: 5-nucleotidase Location: 2457-3240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), 5-nucleotidase (pfam06189)

Seq: DNTA01000018.1 TPA_asm: Cytophagales bacterium isolate UBA10427 contig_4731, whole genome shotgun sequence (50856 bp)
Overview 1 RT 1: 44567-48192 bp Neighborhood of RT #1 [44567, 48192] SlpA RVT-GII GIIM DUF4174 Feature: gene Location: 44567-45067 bp Feature: domain Description: SlpA Location: 44570-45059 bp Feature: domain Description: SlpA Location: 44570-45059 bp Feature: gene Location: 45091-45348 bp Feature: gene Location: 45542-46951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45884-46502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45884-46502 bp Feature: domain Description: GIIM Note: maturase Location: 46556-46766 bp Feature: domain Description: GIIM Note: maturase Location: 46556-46766 bp Feature: gene Location: 47097-47513 bp Feature: domain Description: DUF4174 Location: 47160-47499 bp Feature: domain Description: DUF4174 Location: 47160-47499 bp Feature: gene Location: 47713-48192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SlpA (COG1047), RVT-GII, GIIM (pfam08388), DUF4174 (pfam13778)