myRT

myRT report for GCA_003501365.1_ASM350136v1

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Seq: DNPP01000489.1 TPA_asm: Firmicutes bacterium isolate UBA8346 contig_10686, whole genome shotgun sequence (26726 bp)
Overview 1 RT 1: 11382-13775 bp Neighborhood of RT #1 [11382, 13783] PRK00886 RVT-GII YheO TIGR00004 Feature: gene Location: 11382-11519 bp Feature: domain Description: PRK00886 Location: 11388-11511 bp Feature: domain Description: PRK00886 Location: 1 1 388-1 1 51 1 bp Feature: gene Location: 11742-11891 bp Feature: gene Location: 12362-12601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12368-12485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2368-1 2485 bp Feature: gene Location: 12787-13398 bp Feature: domain Description: YheO Location: 12790-13396 bp Feature: domain Description: YheO Location: 1 2790-1 3396 bp Feature: gene Location: 13403-13783 bp Feature: domain Description: TIGR00004 Location: 13412-13775 bp Feature: domain Description: TIGR00004 Location: 1 341 2-1 3775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00886 (2-phosphosulfolactate phosphatase family protein), RVT-GII, YheO (COG2964), TIGR00004 (reactive intermediate/imine deaminase)

Seq: DNPP01000151.1 TPA_asm: Firmicutes bacterium isolate UBA8346 contig_12124, whole genome shotgun sequence (11464 bp)
Overview 1 RT 1: 2292-5720 bp Neighborhood of RT #1 [2292, 5720] AAA_21 RVT-GII Feature: gene Location: 2292-3455 bp Feature: domain Description: AAA_21 Location: 2424-3282 bp Feature: domain Description: AAA_2 1 Location: 2 42 4-32 82 bp Feature: gene Location: 3983-4180 bp Feature: gene Location: 4634-5260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4910-5204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4910-52 04 bp Feature: gene Location: 5279-5407 bp Feature: gene Location: 5541-5720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-GII

Seq: DNPP01000269.1 TPA_asm: Firmicutes bacterium isolate UBA8346 contig_16401, whole genome shotgun sequence (21090 bp)
Overview 1 RT 1: 6656-20622 bp Neighborhood of RT #1 [6656, 21089] COG4866 RVT-GII GIIM TlpA_like_family FN3 Big_7 Big_7 FN3 Big_3_3 FN3 FN3 Big_3_3 FN3 PKD Feature: gene Location: 6656-7501 bp Feature: domain Description: COG4866 Location: 6671-7493 bp Feature: domain Description: COG4866 Location: 6671-7493 bp Feature: gene Location: 7523-7867 bp Feature: gene Location: 8271-9332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8337-8970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 3 7-8970 bp Feature: domain Description: GIIM Note: maturase Location: 9051-9285 bp Feature: domain Description: GIIM Note: maturase Location: 9051-9285 bp Feature: gene Location: 9747-11402 bp Feature: domain Description: TlpA_like_family Location: 11013-11337 bp Feature: domain Description: TlpA_like_family Location: 11013 -113 3 7 bp Feature: gene Location: 11586-21089 bp Feature: domain Description: FN3 Location: 13878-14106 bp Feature: domain Description: FN3 Location: 13 878-14106 bp Feature: domain Description: Big_7 Location: 14325-14529 bp Feature: domain Description: Big_7 Location: 143 25-14529 bp Feature: domain Description: Big_7 Location: 14643-14829 bp Feature: domain Description: Big_7 Location: 14643 -14829 bp Feature: domain Description: FN3 Location: 16230-16374 bp Feature: domain Description: FN3 Location: 1623 0-163 74 bp Feature: domain Description: Big_3_3 Location: 16593-16719 bp Feature: domain Description: Big_3 _3 Location: 16593 -16719 bp Feature: domain Description: FN3 Location: 17964-18177 bp Feature: domain Description: FN3 Location: 17964-18177 bp Feature: domain Description: FN3 Location: 18579-18819 bp Feature: domain Description: FN3 Location: 18579-18819 bp Feature: domain Description: Big_3_3 Location: 19074-19146 bp Feature: domain Description: Big_3 _3 Location: 19074-19146 bp Feature: domain Description: FN3 Location: 19527-19770 bp Feature: domain Description: FN3 Location: 19527-19770 bp Feature: domain Description: PKD Location: 20421-20622 bp Feature: domain Description: PKD Location: 20421-20622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FN3 (smart00060), Big_7 (pfam17957), Big_3_3 (pfam13750), PKD (smart00089), COG4866 (Uncharacterized protein ), RVT-GII, GIIM (pfam08388), TlpA_like_family (cd02966)

Seq: DNPP01000134.1 TPA_asm: Firmicutes bacterium isolate UBA8346 contig_21442, whole genome shotgun sequence (21175 bp)
Overview 1 RT 1: 2-3415 bp Neighborhood of RT #1 [2, 3456] dinD RVT-GII GIIM SpoOE-like Feature: gene Location: 2-199 bp Feature: domain Description: dinD Location: 8-170 bp Feature: domain Description: dinD Location: 8-170 bp Feature: gene Location: 1244-1564 bp Feature: gene Location: 1594-2889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1894-2527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1894 -2527 bp Feature: domain Description: GIIM Note: maturase Location: 2608-2845 bp Feature: domain Description: GIIM Note: maturase Location: 2608-284 5 bp Feature: gene Location: 2893-3093 bp Feature: gene Location: 3256-3456 bp Feature: domain Description: SpoOE-like Location: 3292-3415 bp Feature: domain Description: SpoOE-like Location: 3292-34 15 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), dinD (PRK11525), SpoOE-like (pfam09388)

Seq: DNPP01000240.1 TPA_asm: Firmicutes bacterium isolate UBA8346 contig_3733, whole genome shotgun sequence (11854 bp)
Overview 1 RT 1: 3422-7201 bp Neighborhood of RT #1 [3422, 7201] DUF4160 DUF2442 RVT-GII Feature: gene Location: 3422-3757 bp Feature: domain Description: DUF4160 Location: 3512-3707 bp Feature: domain Description: DUF4160 Location: 35 12-3707 bp Feature: gene Location: 3788-4054 bp Feature: domain Description: DUF2442 Location: 3806-4010 bp Feature: domain Description: DUF2442 Location: 3806-4010 bp Feature: gene Location: 5370-5891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5646-5844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 646-5 844 bp Feature: gene Location: 5988-6296 bp Feature: gene Location: 6518-7201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4160 (pfam13711), DUF2442 (pfam10387), RVT-GII