myRT

myRT report for GCA_003501565.1_ASM350156v1

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Seq: DNPC01000144.1 TPA_asm: Planctomycetaceae bacterium isolate UBA11363 contig_10503, whole genome shotgun sequence (4328 bp)
Overview 1 RT 1: 2301-4207 bp Neighborhood of RT #1 [2301, 4218] INT_Rci_Hp1_C RVT-DGRs Feature: gene Location: 2301-2558 bp Feature: gene Location: 2861-3613 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2966-3452 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 2966-3452 bp Feature: gene Location: 3682-4218 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3793-4207 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3793-4207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), RVT-DGRs

Seq: DNPC01000265.1 TPA_asm: Planctomycetaceae bacterium isolate UBA11363 contig_3106, whole genome shotgun sequence (4982 bp)
Overview 1 RT 1: 2-3197 bp Neighborhood of RT #1 [2, 3481] RVT-Retrons PRK13531 Feature: gene Location: 2-139 bp Feature: gene Location: 401-1627 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 758-1373 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 758-1373 bp Feature: gene Location: 1620-2264 bp Feature: gene Location: 2270-3481 bp Feature: domain Description: PRK13531 Location: 2393-3197 bp Feature: domain Description: PRK13531 Location: 2 393-3197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13531 (regulatory ATPase RavA; Provisional), RVT-Retrons

Seq: DNPC01000822.1 TPA_asm: Planctomycetaceae bacterium isolate UBA11363 contig_392, whole genome shotgun sequence (45399 bp)
Overview 1 RT 1: 35270-40761 bp Neighborhood of RT #1 [35270, 41048] COG3628 RVT-GII GIIM PulG NosD NosD NosD NosD NosD Feature: gene Location: 35270-35695 bp Feature: domain Description: COG3628 Location: 35342-35576 bp Feature: domain Description: COG3 628 Location: 3 53 42-3 5576 bp Feature: gene Location: 35833-36681 bp Feature: gene Location: 36803-37450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36842-37019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6842-3 7019 bp Feature: domain Description: GIIM Note: maturase Location: 37064-37274 bp Feature: domain Description: GIIM Note: maturase Location: 3 7064-3 7274 bp Feature: gene Location: 37585-37923 bp Feature: domain Description: PulG Location: 37597-37846 bp Feature: domain Description: PulG Location: 3 7597-3 7846 bp Feature: gene Location: 37920-41048 bp Feature: domain Description: NosD Location: 38439-38766 bp Feature: domain Description: NosD Location: 3 843 9-3 8766 bp Feature: domain Description: NosD Location: 38802-39234 bp Feature: domain Description: NosD Location: 3 8802-3 923 4 bp Feature: domain Description: NosD Location: 39588-39858 bp Feature: domain Description: NosD Location: 3 9588-3 9858 bp Feature: domain Description: NosD Location: 40059-40431 bp Feature: domain Description: NosD Location: 40059-4043 1 bp Feature: domain Description: NosD Location: 40527-40761 bp Feature: domain Description: NosD Location: 40527-40761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3628 (Phage baseplate assembly protein W ), RVT-GII, GIIM (pfam08388), PulG (pfam11773), NosD (pfam05048)