myRT

myRT report for GCA_003501625.1_ASM350162v1

Download annotations/find similar RTs

Seq: DNOZ01000016.1 TPA_asm: Cyanobacteria bacterium UBA11366 contig_1, whole genome shotgun sequence (26643 bp)
Overview 1 RT 1: 9793-14475 bp Neighborhood of RT #1 [9793, 14489] PRK10841 BaeS LCIB_C_CA RVT-Retrons Rnc Feature: gene Location: 9793-11088 bp Feature: domain Description: PRK10841 Location: 9817-10153 bp Feature: domain Description: PRK1 0841 Location: 981 7-1 01 53 bp Feature: domain Description: BaeS Location: 10162-11083 bp Feature: domain Description: BaeS Location: 1 01 62-1 1 083 bp Feature: gene Location: 11266-12066 bp Feature: domain Description: LCIB_C_CA Location: 11380-12016 bp Feature: domain Description: LCIB_C_CA Location: 1 1 380-1 201 6 bp Feature: gene Location: 12196-13605 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12742-13360 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2742-1 3360 bp Feature: gene Location: 13618-13758 bp Feature: gene Location: 13803-14489 bp Feature: domain Description: Rnc Location: 13818-14475 bp Feature: domain Description: Rnc Location: 1 381 8-1 4475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10841 (two-component system sensor histidine kinase RcsC), BaeS (COG0642), LCIB_C_CA (pfam18599), RVT-Retrons, Rnc (COG0571)

Seq: DNOZ01000394.1 TPA_asm: Cyanobacteria bacterium UBA11366 contig_1173, whole genome shotgun sequence (25912 bp)
Overview 1 RT 1: 1802-4286 bp Neighborhood of RT #1 [1802, 4286] RVT-UG7 Feature: gene Location: 1802-2023 bp Feature: gene Location: 2001-2258 bp Feature: gene Location: 2266-2967 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2677-2959 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2 677-2 959 bp Feature: gene Location: 3135-3509 bp Feature: gene Location: 4035-4286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7

Seq: DNOZ01000155.1 TPA_asm: Cyanobacteria bacterium UBA11366 contig_120, whole genome shotgun sequence (3820 bp)
Overview 1 RT 1: 144-3679 bp Neighborhood of RT #1 [144, 3693] YggE PRK07459 RVT_N RVT-GII GIIM PRK07459 Feature: gene Location: 144-875 bp Feature: domain Description: YggE Location: 192-873 bp Feature: domain Description: YggE Location: 192-873 bp Feature: gene Location: 964-1107 bp Feature: domain Description: PRK07459 Location: 967-1081 bp Feature: domain Description: PRK07459 Location: 967-1081 bp Feature: gene Location: 1259-2956 bp Feature: domain Description: RVT_N Location: 1301-1547 bp Feature: domain Description: RVT_N Location: 13 01-1547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1589-2264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1589-2264 bp Feature: domain Description: GIIM Note: maturase Location: 2336-2564 bp Feature: domain Description: GIIM Note: maturase Location: 23 3 6-2564 bp Feature: gene Location: 3529-3693 bp Feature: domain Description: PRK07459 Location: 3532-3679 bp Feature: domain Description: PRK07459 Location: 3 53 2-3 679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YggE (COG2968), PRK07459 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: DNOZ01000003.1 TPA_asm: Cyanobacteria bacterium UBA11366 contig_42, whole genome shotgun sequence (42323 bp)
Overview 1 RT 1: 2134-8520 bp Neighborhood of RT #1 [2134, 8552] Cas2_I_II_III Uma2 RVT-CRISPR Cas1_I-II-III RnaI Feature: gene Location: 2134-2409 bp Feature: domain Description: Cas2_I_II_III Location: 2143-2371 bp Feature: domain Description: Cas2_I_II_III Location: 214 3-2371 bp Feature: gene Location: 2517-3143 bp Feature: domain Description: Uma2 Location: 2550-3111 bp Feature: domain Description: Uma2 Location: 2550-3111 bp Feature: gene Location: 3261-5609 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3549-4155 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 354 9-4 155 bp Feature: domain Description: Cas1_I-II-III Location: 4617-5571 bp Feature: domain Description: Cas1_I-II-III Location: 4 617-5571 bp Feature: gene Location: 5934-7406 bp Feature: gene Location: 7590-8552 bp Feature: domain Description: RnaI Location: 7881-8520 bp Feature: domain Description: RnaI Location: 7881-8520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Uma2 (pfam05685), RVT-CRISPR, Cas1_I-II-III (cl00656), RnaI (COG3719)