myRT

myRT report for GCA_003501795.1_ASM350179v1

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Seq: DNOV01000410.1 TPA_asm: Cyanobacteria bacterium UBA11369 contig_1925, whole genome shotgun sequence (11190 bp)
Overview 1 RT 1: 2-5682 bp Neighborhood of RT #1 [2, 5699] TPR_12 COG4995 RVT_N RVT-GII GIIM McrA InsQ Y1_Tnp Feature: gene Location: 2-925 bp Feature: domain Description: TPR_12 Location: 143-248 bp Feature: domain Description: TPR_1 2 Location: 1 43-248 bp Feature: domain Description: COG4995 Location: 287-896 bp Feature: domain Description: COG4995 Location: 287-896 bp Feature: gene Location: 1266-1619 bp Feature: gene Location: 1826-3550 bp Feature: domain Description: RVT_N Location: 2042-2288 bp Feature: domain Description: RVT_N Location: 2042-2288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2339-2966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2339-2966 bp Feature: domain Description: GIIM Note: maturase Location: 3023-3215 bp Feature: domain Description: GIIM Note: maturase Location: 3023-321 5 bp Feature: domain Description: McrA Location: 3230-3521 bp Feature: domain Description: McrA Location: 3230-3521 bp Feature: gene Location: 3838-5211 bp Feature: domain Description: InsQ Location: 3841-5101 bp Feature: domain Description: InsQ Location: 3841 -51 01 bp Feature: gene Location: 5286-5699 bp Feature: domain Description: Y1_Tnp Location: 5322-5682 bp Feature: domain Description: Y1 _Tnp Location: 5322-5682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_12 (pfam13424), COG4995 (Uncharacterized conserved protein, contains CHAT domain ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), InsQ (COG0675), Y1_Tnp (pfam01797)

Seq: DNOV01000003.1 TPA_asm: Cyanobacteria bacterium UBA11369 contig_43, whole genome shotgun sequence (12484 bp)
Overview 1 RT 1: 10180-11804 bp Neighborhood of RT #1 [10180, 11884] DDE_Tnp_1 RVT-CRISPR-like Feature: gene Location: 10180-10392 bp Feature: gene Location: 10536-11096 bp Feature: domain Description: DDE_Tnp_1 Location: 10644-11052 bp Feature: domain Description: DDE_Tnp_1 Location: 10644-11052 bp Feature: gene Location: 11411-11884 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 11414-11804 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 11414-11804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-CRISPR

Seq: DNOV01000681.1 TPA_asm: Cyanobacteria bacterium UBA11369 contig_453, whole genome shotgun sequence (89604 bp)
Overview 1 RT 1: 35564-41058 bp Neighborhood of RT #1 [35564, 41084] RVT-GII Intron_maturas2 HNHc ProV Feature: gene Location: 35564-35725 bp Feature: gene Location: 36007-36135 bp Feature: gene Location: 36549-38510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36960-37755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6960-3 7755 bp Feature: domain Description: Intron_maturas2 Location: 37857-38094 bp Feature: domain Description: Intron_maturas2 Location: 3 7857-3 8094 bp Feature: domain Description: HNHc Note: nucleases Location: 38253-38442 bp Feature: domain Description: HNHc Note: nucleases Location: 3 8253 -3 8442 bp Feature: gene Location: 39022-39723 bp Feature: gene Location: 39876-41084 bp Feature: domain Description: ProV Location: 39897-41058 bp Feature: domain Description: ProV Location: 3 9897-41058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), ProV (COG4175)

Seq: DNOV01000778.1 TPA_asm: Cyanobacteria bacterium UBA11369 contig_454, whole genome shotgun sequence (39350 bp)
Overview 1 RT 1: 30344-38501 bp Neighborhood of RT #1 [30344, 38501] InsQ RVT_N RVT-GII RVT-GII RVT-GII Intron_maturas2 HNHc Feature: gene Location: 30344-31174 bp Feature: domain Description: InsQ Location: 30353-31115 bp Feature: domain Description: InsQ Location: 30353-31115 bp Feature: gene Location: 32470-32724 bp Feature: gene Location: 32637-33467 bp Feature: domain Description: RVT_N Location: 32661-32856 bp Feature: domain Description: RVT_N Location: 32661-32856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32898-33450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32898-334 50 bp Feature: gene Location: 33501-33707 bp Feature: gene Location: 33827-34924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34217-34916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 217-34 916 bp Feature: gene Location: 35655-36095 bp Feature: gene Location: 36100-36975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36106-36217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36106-36217 bp Feature: domain Description: Intron_maturas2 Location: 36322-36571 bp Feature: domain Description: Intron_maturas2 Location: 36322-36571 bp Feature: domain Description: HNHc Note: nucleases Location: 36718-36907 bp Feature: domain Description: HNHc Note: nucleases Location: 36718-36907 bp Feature: gene Location: 37684-37845 bp Feature: gene Location: 38091-38501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: DNOV01000230.1 TPA_asm: Cyanobacteria bacterium UBA11369 contig_586, whole genome shotgun sequence (17615 bp)
Overview 1 RT 1: 9608-17467 bp Neighborhood of RT #1 [9608, 17475] InsQ InsQ RVT_N RVT-GII McrA InsQ TPR Spy Feature: gene Location: 9608-9754 bp Feature: gene Location: 9793-11520 bp Feature: domain Description: InsQ Location: 9838-10003 bp Feature: domain Description: InsQ Location: 9838-10003 bp Feature: domain Description: InsQ Location: 10243-11413 bp Feature: domain Description: InsQ Location: 10243-11413 bp Feature: gene Location: 12191-13822 bp Feature: domain Description: RVT_N Location: 12227-12458 bp Feature: domain Description: RVT_N Location: 12227-1245 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12524-13181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125 24-13181 bp Feature: domain Description: McrA Location: 13415-13736 bp Feature: domain Description: McrA Location: 13415 -13736 bp Feature: gene Location: 14033-15157 bp Feature: domain Description: InsQ Location: 14045-15017 bp Feature: domain Description: InsQ Location: 14045 -15 017 bp Feature: gene Location: 15277-17475 bp Feature: domain Description: TPR Location: 15286-15484 bp Feature: domain Description: TPR Location: 15 286-15 484 bp Feature: domain Description: Spy Location: 15559-17467 bp Feature: domain Description: Spy Location: 15 5 5 9-17467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, McrA (COG4058), TPR (smart00028), Spy (COG3914)

Seq: DNOV01000331.1 TPA_asm: Cyanobacteria bacterium UBA11369 contig_974, whole genome shotgun sequence (15224 bp)
Overview 1 RT 1: 2576-7024 bp Neighborhood of RT #1 [2576, 7341] YjbI TPR RVT-Retrons Rnc NYN Feature: gene Location: 2576-2899 bp Feature: gene Location: 3050-3886 bp Feature: domain Description: YjbI Location: 3134-3494 bp Feature: domain Description: YjbI Location: 3134-3494 bp Feature: domain Description: TPR Location: 3527-3704 bp Feature: domain Description: TPR Location: 3527-3704 bp Feature: gene Location: 4227-5639 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4779-5397 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4779-5397 bp Feature: gene Location: 5754-6467 bp Feature: domain Description: Rnc Location: 5799-6453 bp Feature: domain Description: Rnc Location: 5799-6 453 bp Feature: gene Location: 6571-7341 bp Feature: domain Description: NYN Location: 6631-7024 bp Feature: domain Description: NYN Location: 6 6 31-7024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjbI (COG2346), TPR (smart00028), RVT-Retrons, Rnc (COG0571), NYN (pfam01936)