myRT

myRT report for GCA_003504255.1_ASM350425v1

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Seq: DOAR01000033.1 TPA_asm: Lentisphaeria bacterium isolate UBA12446 contig_2126, whole genome shotgun sequence (45950 bp)
Overview 1 RT 1: 41584-45947 bp Neighborhood of RT #1 [41584, 45947] Phage_int_SAM_1 INT_RitA_C_like DDE_Tnp_IS66_C RVT-UG4 Feature: gene Location: 41584-43482 bp Feature: domain Description: Phage_int_SAM_1 Location: 42634-42835 bp Feature: domain Description: Phage_int_SAM_1 Location: 42634-42835 bp Feature: domain Description: INT_RitA_C_like Location: 42925-43438 bp Feature: domain Description: INT_RitA_C_like Location: 42925-43438 bp Feature: gene Location: 43691-43897 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 43742-43850 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 43742-43850 bp Feature: gene Location: 43875-44837 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 44073-44544 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 44073-44544 bp Feature: gene Location: 45186-45947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), DDE_Tnp_IS66_C (pfam13817), RVT-UG4

Seq: DOAR01000016.1 TPA_asm: Lentisphaeria bacterium isolate UBA12446 contig_3169, whole genome shotgun sequence (77784 bp)
Overview 1 RT 1: 71609-77156 bp Neighborhood of RT #1 [71609, 77156] pyruv_ox_red RVT-GII Feature: gene Location: 71609-75142 bp Feature: domain Description: pyruv_ox_red Location: 71627-75128 bp Feature: domain Description: pyruv_ox_red Location: 7162 7-7512 8 bp Feature: gene Location: 75622-75756 bp Feature: gene Location: 76313-76573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76316-76562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76316-76562 bp Feature: gene Location: 76602-76781 bp Feature: gene Location: 76929-77156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pyruv_ox_red (TIGR02176), RVT-GII

Seq: DOAR01000003.1 TPA_asm: Lentisphaeria bacterium isolate UBA12446 contig_3232, whole genome shotgun sequence (29845 bp)
Overview 1 RT 1: 25245-29751 bp Neighborhood of RT #1 [25245, 29751] NuoG 2Fe-2S_thioredx NuoF RVT-UG4 Feature: gene Location: 25245-25952 bp Feature: domain Description: NuoG Location: 25260-25875 bp Feature: domain Description: NuoG Location: 25260-25875 bp Feature: gene Location: 25955-27781 bp Feature: domain Description: 2Fe-2S_thioredx Location: 25997-26420 bp Feature: domain Description: 2Fe-2S_thioredx Location: 25997-26420 bp Feature: domain Description: NuoF Location: 26549-27683 bp Feature: domain Description: NuoF Location: 26549-27683 bp Feature: gene Location: 28347-28655 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 28473-28626 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 28473 -28626 bp Feature: gene Location: 28682-29440 bp Feature: gene Location: 29539-29751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NuoG (TIGR01973), 2Fe-2S_thioredx (pfam01257), NuoF (COG1894), RVT-UG4

Seq: DOAR01000030.1 TPA_asm: Lentisphaeria bacterium isolate UBA12446 contig_3827, whole genome shotgun sequence (116442 bp)
Overview 1 RT 1: 34442-40322 bp 2 RT 2: 52683-58006 bp Neighborhood of RT #1 [34442, 40322] ParE_toxin RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like xerS INT_RitA_C_like RVT-GII Neighborhood of RT #2 [52683, 58006] PRK15407 glpT RVT-GII RVT-GII Feature: gene Location: 34442-34636 bp Feature: gene Location: 34664-34792 bp Feature: domain Description: ParE_toxin Location: 34676-34784 bp Feature: domain Description: ParE_toxin Location: 34 676-34 784 bp Feature: gene Location: 34909-35511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34915-35134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 915-35134 bp Feature: domain Description: GIIM Note: maturase Location: 35212-35419 bp Feature: domain Description: GIIM Note: maturase Location: 35212-354 19 bp Feature: gene Location: 35662-36675 bp Feature: domain Description: Phage_int_SAM_1 Location: 35710-35959 bp Feature: domain Description: Phage_int_SAM_1 Location: 35710-35959 bp Feature: domain Description: INT_RitC_C_like Location: 36040-36592 bp Feature: domain Description: INT_RitC_C_like Location: 3604 0-36592 bp Feature: gene Location: 36662-37648 bp Feature: domain Description: INT_RitB_C_like Location: 36998-37580 bp Feature: domain Description: INT_RitB_C_like Location: 36998-37580 bp Feature: gene Location: 37641-38879 bp Feature: domain Description: xerS Location: 37998-38121 bp Feature: domain Description: xerS Location: 37998-38121 bp Feature: domain Description: INT_RitA_C_like Location: 38316-38847 bp Feature: domain Description: INT_RitA_C_like Location: 38316-3884 7 bp Feature: gene Location: 38986-39624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39190-39577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39190-39577 bp Feature: gene Location: 39893-40069 bp Feature: gene Location: 40146-40322 bp Feature: gene Location: 52683-54020 bp Feature: domain Description: PRK15407 Location: 52692-53997 bp Feature: domain Description: PRK154 07 Location: 52692-53997 bp Feature: gene Location: 54230-55639 bp Feature: domain Description: glpT Location: 54257-55601 bp Feature: domain Description: glpT Location: 54 257-55601 bp Feature: gene Location: 56052-56282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56067-56262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56067-56262 bp Feature: gene Location: 56303-56734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56582-56666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56582-56666 bp Feature: gene Location: 57344-57760 bp Feature: gene Location: 57848-58006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE_toxin (pfam05016), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), xerS (PRK05084), INT_RitA_C_like (cd01188), PRK15407 (lipopolysaccharide biosynthesis protein RfbH; Provisional), glpT (TIGR00712)

Seq: DOAR01000049.1 TPA_asm: Lentisphaeria bacterium isolate UBA12446 contig_899, whole genome shotgun sequence (18378 bp)
Overview 1 RT 1: 9589-12469 bp Neighborhood of RT #1 [9589, 12492] Gp49 RVT-UG4 Transglut_core3 PqqD Feature: gene Location: 9589-9918 bp Feature: domain Description: Gp49 Location: 9631-9883 bp Feature: domain Description: Gp49 Location: 9631-9883 bp Feature: gene Location: 10397-10645 bp Feature: gene Location: 10655-11719 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 11003-11462 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 11003-11462 bp Feature: gene Location: 11721-12155 bp Feature: domain Description: Transglut_core3 Location: 11871-12141 bp Feature: domain Description: Transglut_core3 Location: 11871-12141 bp Feature: gene Location: 12202-12492 bp Feature: domain Description: PqqD Location: 12271-12469 bp Feature: domain Description: PqqD Location: 12271-12469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), RVT-UG4, Transglut_core3 (pfam13471), PqqD (pfam05402)