myRT

myRT report for GCA_003504465.1_ASM350446v1

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Seq: DOAB01000405.1 TPA_asm: Pseudomonas sp. isolate UBA10387 contig_1191, whole genome shotgun sequence (18640 bp)
Overview 1 RT 1: 12722-18613 bp Neighborhood of RT #1 [12722, 18639] tgt queA RVT-Retrons TIR_2 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 12722-13855 bp Feature: domain Description: tgt Location: 12743-13823 bp Feature: domain Description: tgt Location: 1 2743-1 3823 bp Feature: gene Location: 13852-14901 bp Feature: domain Description: queA Location: 13855-14863 bp Feature: domain Description: queA Location: 1 3855-1 4863 bp Feature: gene Location: 15579-17060 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15729-16317 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 5729-1 631 7 bp Feature: domain Description: TIR_2 Location: 16650-17007 bp Feature: domain Description: TIR_2 Location: 1 6650-1 7007 bp Feature: gene Location: 17579-17839 bp Feature: gene Location: 17908-18639 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17929-18478 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 7929-1 8478 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 18499-18613 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 8499-1 861 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT tgt (PRK00112), queA (TIGR00113), RVT-Retrons, TIR_2 (pfam13676), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: DOAB01000024.1 TPA_asm: Pseudomonas sp. isolate UBA10387 contig_523, whole genome shotgun sequence (18977 bp)
Overview 1 RT 1: 1-2673 bp Neighborhood of RT #1 [1, 2702] DacB RVT-GII GIIM PRK11702 Feature: gene Location: 1-237 bp Feature: domain Description: DacB Location: 28-238 bp Feature: domain Description: DacB Location: 2 8-2 38 bp Feature: gene Location: 439-1761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 697-1312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 697-1312 bp Feature: domain Description: GIIM Note: maturase Location: 1369-1594 bp Feature: domain Description: GIIM Note: maturase Location: 1369-1594 bp Feature: gene Location: 2010-2180 bp Feature: gene Location: 2358-2702 bp Feature: domain Description: PRK11702 Location: 2361-2673 bp Feature: domain Description: PRK11702 Location: 2 361-2 673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DacB (COG2027), PRK11702 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388)

Seq: DOAB01000467.1 TPA_asm: Pseudomonas sp. isolate UBA10387 contig_605, whole genome shotgun sequence (11662 bp)
Overview 1 RT 1: 3469-7932 bp Neighborhood of RT #1 [3469, 8015] DUF4223 RVT-GII GIIM PRK05257 HTH_20 Feature: gene Location: 3469-3660 bp Feature: domain Description: DUF4223 Location: 3472-3640 bp Feature: domain Description: DUF4223 Location: 3 472-3 640 bp Feature: gene Location: 3845-4015 bp Feature: gene Location: 4165-5586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4522-5137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4522-513 7 bp Feature: domain Description: GIIM Note: maturase Location: 5191-5419 bp Feature: domain Description: GIIM Note: maturase Location: 5191-5419 bp Feature: gene Location: 5908-7545 bp Feature: domain Description: PRK05257 Location: 5983-7453 bp Feature: domain Description: PRK05257 Location: 5983 -7453 bp Feature: gene Location: 7680-8015 bp Feature: domain Description: HTH_20 Location: 7764-7932 bp Feature: domain Description: HTH_20 Location: 7764-793 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4223 (pfam13978), RVT-GII, GIIM (pfam08388), PRK05257 (malate:quinone oxidoreductase; Validated), HTH_20 (pfam12840)