myRT

myRT report for GCA_003505475.1_ASM350547v1

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Seq: DNYD01000492.1 TPA_asm: Planktothrix sp. UBA10369 contig_129, whole genome shotgun sequence (18276 bp)
Overview 1 RT 1: 1-4136 bp Neighborhood of RT #1 [1, 4138] RVT-GII GIIM HNH PRK14299 PRK13410 Feature: gene Location: 1-849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-355 bp Feature: domain Description: GIIM Note: maturase Location: 469-700 bp Feature: domain Description: GIIM Note: maturase Location: 469-700 bp Feature: domain Description: HNH Note: nucleases Location: 760-850 bp Feature: domain Description: HNH Note: nucleases Location: 760-850 bp Feature: gene Location: 1038-2027 bp Feature: domain Description: PRK14299 Location: 1050-1992 bp Feature: domain Description: PRK1 4299 Location: 1 050-1 992 bp Feature: gene Location: 2093-4138 bp Feature: domain Description: PRK13410 Location: 2117-4136 bp Feature: domain Description: PRK1 341 0 Location: 21 1 7-41 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14299 (chaperone protein DnaJ; Provisional), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK13410 (molecular chaperone DnaK; Provisional)

Seq: DNYD01000458.1 TPA_asm: Planktothrix sp. UBA10369 contig_1939, whole genome shotgun sequence (8014 bp)
Overview 1 RT 1: 1-2328 bp Neighborhood of RT #1 [1, 2429] RVT-GII GIIM HNHc DUF4065 Feature: gene Location: 1-1161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-415 bp Feature: domain Description: GIIM Note: maturase Location: 514-715 bp Feature: domain Description: GIIM Note: maturase Location: 514-715 bp Feature: domain Description: HNHc Note: nucleases Location: 925-1075 bp Feature: domain Description: HNHc Note: nucleases Location: 92 5-1075 bp Feature: gene Location: 1498-1866 bp Feature: gene Location: 1878-2429 bp Feature: domain Description: DUF4065 Location: 1986-2328 bp Feature: domain Description: DUF4065 Location: 1986-2 32 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF4065 (pfam13274)

Seq: DNYD01000397.1 TPA_asm: Planktothrix sp. UBA10369 contig_2629, whole genome shotgun sequence (12353 bp)
Overview 1 RT 1: 9472-12303 bp Neighborhood of RT #1 [9472, 12350] TldD RVT_N RVT-GII GIIM McrA Feature: gene Location: 9472-9708 bp Feature: gene Location: 9747-10622 bp Feature: domain Description: TldD Location: 9753-10608 bp Feature: domain Description: TldD Location: 9753 -10608 bp Feature: gene Location: 10734-12350 bp Feature: RT Description: RVT_N Location: 10740-10893 bp Feature: RT Description: RVT_N Location: 10740-10893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10935-11604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1093 5-11604 bp Feature: domain Description: GIIM Note: maturase Location: 11703-11904 bp Feature: domain Description: GIIM Note: maturase Location: 11703 -11904 bp Feature: domain Description: McrA Location: 12006-12303 bp Feature: domain Description: McrA Location: 12006-123 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), TldD (COG0312)

Seq: DNYD01000150.1 TPA_asm: Planktothrix sp. UBA10369 contig_3394, whole genome shotgun sequence (5800 bp)
Overview 1 RT 1: 187-2954 bp Neighborhood of RT #1 [187, 2954] Avd_like RVT-DGRs Uma2 Feature: gene Location: 187-537 bp Feature: domain Description: Avd_like Location: 205-511 bp Feature: domain Description: Avd_like Location: 205-511 bp Feature: gene Location: 534-1592 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 738-1386 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 738-1386 bp Feature: gene Location: 2000-2602 bp Feature: domain Description: Uma2 Location: 2033-2585 bp Feature: domain Description: Uma2 Location: 2033-2585 bp Feature: gene Location: 2763-2954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), Uma2 (pfam05685), RVT-DGRs