myRT

myRT report for GCA_003505715.1_ASM350571v1

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Seq: DNXU01000162.1 TPA_asm: Cyanobacteria bacterium UBA8803 contig_191, whole genome shotgun sequence (19949 bp)
Overview 1 RT 1: 15998-19828 bp Neighborhood of RT #1 [15998, 19866] Y1_Tnp tspaseT_teng_C RVT_N RVT-GII GIIM HNHc Feature: gene Location: 15998-16273 bp Feature: domain Description: Y1_Tnp Location: 16067-16262 bp Feature: domain Description: Y1 _Tnp Location: 1 6067-1 6262 bp Feature: gene Location: 16364-17554 bp Feature: domain Description: tspaseT_teng_C Location: 17204-17444 bp Feature: domain Description: tspaseT_teng_C Location: 1 7204-1 7444 bp Feature: gene Location: 18055-19866 bp Feature: domain Description: RVT_N Location: 18196-18442 bp Feature: domain Description: RVT_N Location: 1 81 96-1 8442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18484-19147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8484-1 91 47 bp Feature: domain Description: GIIM Note: maturase Location: 19252-19483 bp Feature: domain Description: GIIM Note: maturase Location: 1 9252-1 9483 bp Feature: domain Description: HNHc Note: nucleases Location: 19672-19828 bp Feature: domain Description: HNHc Note: nucleases Location: 1 9672-1 9828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y1_Tnp (pfam01797), tspaseT_teng_C (TIGR01766), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: DNXU01000364.1 TPA_asm: Cyanobacteria bacterium UBA8803 contig_285, whole genome shotgun sequence (12194 bp)
Overview 1 RT 1: 1910-11125 bp Neighborhood of RT #1 [1910, 11166] PAS PRK11360 PRK11360 GAF BaeS HTH_XRE NACHT RVT-CRISPR Cas1_I-II-III Feature: gene Location: 1910-4828 bp Feature: domain Description: PAS Location: 1979-2225 bp Feature: domain Description: PAS Location: 1979-2 2 2 5 bp Feature: domain Description: PRK11360 Location: 2483-2921 bp Feature: domain Description: PRK11360 Location: 2 483-2 92 1 bp Feature: domain Description: PRK11360 Location: 2948-3365 bp Feature: domain Description: PRK11360 Location: 2 948-3365 bp Feature: domain Description: GAF Location: 3371-3812 bp Feature: domain Description: GAF Location: 3371-3812 bp Feature: domain Description: BaeS Location: 3815-4820 bp Feature: domain Description: BaeS Location: 3815-482 0 bp Feature: gene Location: 5150-8755 bp Feature: domain Description: HTH_XRE Location: 5210-5375 bp Feature: domain Description: HTH_XRE Location: 52 10-5375 bp Feature: domain Description: NACHT Location: 5591-6059 bp Feature: domain Description: NACHT Location: 5591-6059 bp Feature: gene Location: 9160-11166 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 9349-9958 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 9349-9958 bp Feature: domain Description: Cas1_I-II-III Location: 10168-11125 bp Feature: domain Description: Cas1_I-II-III Location: 10168-1112 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAS (smart00091), PRK11360 (two-component system sensor histidine kinase AtoS), GAF (smart00065), BaeS (COG0642), HTH_XRE (smart00530), NACHT (pfam05729), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: DNXU01000409.1 TPA_asm: Cyanobacteria bacterium UBA8803 contig_3121, whole genome shotgun sequence (12159 bp)
Overview 1 RT 1: 167-7484 bp Neighborhood of RT #1 [167, 7510] YggE PRK07459 RVT_N RVT-GII GIIM HNH RVT_N RVT-GII GIIM HNHc PRK13927 Feature: gene Location: 167-904 bp Feature: domain Description: YggE Location: 221-902 bp Feature: domain Description: YggE Location: 221-902 bp Feature: gene Location: 1004-1198 bp Feature: domain Description: PRK07459 Location: 1007-1172 bp Feature: domain Description: PRK07459 Location: 1007-1172 bp Feature: gene Location: 1220-2974 bp Feature: domain Description: RVT_N Location: 1256-1502 bp Feature: domain Description: RVT_N Location: 1256-1502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1544-2198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1544-2198 bp Feature: domain Description: GIIM Note: maturase Location: 2312-2546 bp Feature: domain Description: GIIM Note: maturase Location: 23 12-2546 bp Feature: domain Description: HNH Note: nucleases Location: 2759-2891 bp Feature: domain Description: HNH Note: nucleases Location: 2759-2891 bp Feature: gene Location: 3471-3668 bp Feature: gene Location: 3692-5443 bp Feature: domain Description: RVT_N Location: 3725-3971 bp Feature: domain Description: RVT_N Location: 3 725-3 971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4013-4679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4013 -4679 bp Feature: domain Description: GIIM Note: maturase Location: 4781-5018 bp Feature: domain Description: GIIM Note: maturase Location: 4781-5018 bp Feature: domain Description: HNHc Note: nucleases Location: 5207-5360 bp Feature: domain Description: HNHc Note: nucleases Location: 5207-53 60 bp Feature: gene Location: 5485-5766 bp Feature: gene Location: 6473-7510 bp Feature: domain Description: PRK13927 Location: 6491-7484 bp Feature: domain Description: PRK13 927 Location: 6491-7484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YggE (COG2968), PRK07459 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), HNHc (smart00507), PRK13927 (rod shape-determining protein MreB; Provisional)

Seq: DNXU01000030.1 TPA_asm: Cyanobacteria bacterium UBA8803 contig_3201, whole genome shotgun sequence (3780 bp)
Overview 1 RT 1: 3-3777 bp Neighborhood of RT #1 [3, 3777] RVT-Retrons OmpR Feature: gene Location: 3-272 bp Feature: gene Location: 1576-2976 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2122-2740 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2122-274 0 bp Feature: gene Location: 3187-3495 bp Feature: domain Description: OmpR Location: 3196-3466 bp Feature: domain Description: OmpR Location: 3196-34 66 bp Feature: gene Location: 3643-3777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, OmpR (COG0745)

Seq: DNXU01000354.1 TPA_asm: Cyanobacteria bacterium UBA8803 contig_3900, whole genome shotgun sequence (15069 bp)
Overview 1 RT 1: 5426-9125 bp Neighborhood of RT #1 [5426, 9125] DUF928 aroK RVT_N RVT-GII GIIM McrA Feature: gene Location: 5426-6241 bp Feature: domain Description: DUF928 Location: 5636-6227 bp Feature: domain Description: DUF928 Location: 5 636-6227 bp Feature: gene Location: 6284-6859 bp Feature: domain Description: aroK Location: 6305-6821 bp Feature: domain Description: aroK Location: 6305 -6821 bp Feature: gene Location: 6980-8731 bp Feature: domain Description: RVT_N Location: 7016-7262 bp Feature: domain Description: RVT_N Location: 7016-7262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7304-7994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7304-7994 bp Feature: domain Description: GIIM Note: maturase Location: 8099-8324 bp Feature: domain Description: GIIM Note: maturase Location: 8099-8324 bp Feature: domain Description: McrA Location: 8414-8687 bp Feature: domain Description: McrA Location: 8414-8687 bp Feature: gene Location: 8331-8639 bp Feature: gene Location: 8961-9125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF928 (pfam06051), aroK (PRK05057), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: DNXU01000481.1 TPA_asm: Cyanobacteria bacterium UBA8803 contig_452, whole genome shotgun sequence (16132 bp)
Overview 1 RT 1: 9487-15976 bp Neighborhood of RT #1 [9487, 16107] Y1_Tnp InsQ RVT_N RVT-GII YkfC HNHc RVT_N RVT-GII YkfC HNHc Feature: gene Location: 9487-10035 bp Feature: domain Description: Y1_Tnp Location: 9676-10024 bp Feature: domain Description: Y1_Tnp Location: 96 76 -10024 bp Feature: gene Location: 9966-11153 bp Feature: domain Description: InsQ Location: 9978-11076 bp Feature: domain Description: InsQ Location: 9978-11076 bp Feature: gene Location: 11744-13405 bp Feature: domain Description: RVT_N Location: 11795-12038 bp Feature: domain Description: RVT_N Location: 11795-12038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12080-12707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12080-12707 bp Feature: domain Description: YkfC Location: 12887-13007 bp Feature: domain Description: YkfC Location: 12887-13007 bp Feature: domain Description: HNHc Note: nucleases Location: 13202-13376 bp Feature: domain Description: HNHc Note: nucleases Location: 13202-13376 bp Feature: gene Location: 13670-13990 bp Feature: gene Location: 14170-16107 bp Feature: domain Description: RVT_N Location: 14263-14509 bp Feature: domain Description: RVT_N Location: 1426 3-14509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14551-15265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14551-1526 5 bp Feature: domain Description: YkfC Location: 15508-15706 bp Feature: domain Description: YkfC Location: 15508-15706 bp Feature: domain Description: HNHc Note: nucleases Location: 15832-15976 bp Feature: domain Description: HNHc Note: nucleases Location: 15832-15976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y1_Tnp (pfam01797), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: DNXU01000577.1 TPA_asm: Cyanobacteria bacterium UBA8803 contig_5318, whole genome shotgun sequence (9719 bp)
Overview 1 RT 1: 2230-9695 bp Neighborhood of RT #1 [2230, 9718] RTPR RVT_N RVT-GII GIIM McrA RVT_N RVT-GII GIIM RTPR Feature: gene Location: 2230-2526 bp Feature: gene Location: 2750-3010 bp Feature: domain Description: RTPR Location: 2783-3005 bp Feature: domain Description: RTPR Location: 27 83-3005 bp Feature: gene Location: 3710-5539 bp Feature: domain Description: RVT_N Location: 3782-4028 bp Feature: domain Description: RVT_N Location: 37 82-4028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4070-4742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407 0-47 42 bp Feature: domain Description: GIIM Note: maturase Location: 4847-5078 bp Feature: domain Description: GIIM Note: maturase Location: 4847 -507 8 bp Feature: domain Description: McrA Location: 5168-5432 bp Feature: domain Description: McrA Location: 5168-5432 bp Feature: gene Location: 6250-7872 bp Feature: domain Description: RVT_N Location: 6292-6538 bp Feature: domain Description: RVT_N Location: 6292-6538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6580-7261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6580-7 261 bp Feature: domain Description: GIIM Note: maturase Location: 7363-7597 bp Feature: domain Description: GIIM Note: maturase Location: 7 363-7 597 bp Feature: gene Location: 9470-9718 bp Feature: domain Description: RTPR Location: 9479-9695 bp Feature: domain Description: RTPR Location: 947 9-9695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RTPR (TIGR02505), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: DNXU01000569.1 TPA_asm: Cyanobacteria bacterium UBA8803 contig_564, whole genome shotgun sequence (26866 bp)
Overview 1 RT 1: 6043-10963 bp Neighborhood of RT #1 [6043, 11001] Cas_csx3 TIGR03985 RVT-CRISPR Cas1_I-II-III Feature: gene Location: 6043-6945 bp Feature: domain Description: Cas_csx3 Location: 6142-6358 bp Feature: domain Description: Cas_csx3 Location: 6142-6358 bp Feature: gene Location: 7030-8454 bp Feature: domain Description: TIGR03985 Location: 7675-8425 bp Feature: domain Description: TIGR0398 5 Location: 7675-8 425 bp Feature: gene Location: 8642-9472 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 8954-9464 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 8 954-9464 bp Feature: gene Location: 9506-9733 bp Feature: gene Location: 9757-11001 bp Feature: domain Description: Cas1_I-II-III Location: 10009-10963 bp Feature: domain Description: Cas1_I-II-III Location: 10009-10963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_csx3 (pfam09620), TIGR03985 (CRISPR-associated protein, TIGR03985 family), RVT-CRISPR, Cas1_I-II-III (cl00656)