myRT

myRT report for GCA_003506685.1_ASM350668v1

Download annotations/find similar RTs

Seq: DNYW01000024.1 TPA_asm: Flavobacteriaceae bacterium isolate UBA7949 contig_16699, whole genome shotgun sequence (3929 bp)
Overview 1 RT 1: 1-3192 bp Neighborhood of RT #1 [1, 3884] PTZ00368 L1-EN RVT-UNC Feature: gene Location: 1-945 bp Feature: domain Description: PTZ00368 Location: 685-859 bp Feature: domain Description: PTZ00368 Location: 685-859 bp Feature: gene Location: 1047-3884 bp Feature: domain Description: L1-EN Location: 1062-1695 bp Feature: domain Description: L1 -EN Location: 1 062-1 695 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2571-3192 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2571 -31 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PTZ00368 (universal minicircle sequence binding protein (UMSBP); Provisional), L1-EN (cd09076), RVT-GII/RVT-CRISPR/RVT-UG25(RVT-UNC)

Seq: DNYW01000360.1 TPA_asm: Flavobacteriaceae bacterium isolate UBA7949 contig_16808, whole genome shotgun sequence (4408 bp)
Overview 1 RT 1: 146-4393 bp Neighborhood of RT #1 [146, 4393] L1-EN RVT-UNC Feature: gene Location: 146-2992 bp Feature: domain Description: L1-EN Location: 155-602 bp Feature: domain Description: L1-EN Location: 155-602 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1667-2315 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1667-2 315 bp Feature: gene Location: 3095-4393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: DNYW01000112.1 TPA_asm: Flavobacteriaceae bacterium isolate UBA7949 contig_24364, whole genome shotgun sequence (3192 bp)
Overview 1 RT 1: 81-1596 bp Neighborhood of RT #1 [81, 2084] RVT-GII Feature: gene Location: 81-2084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900-1596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900-1596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: DNYW01000169.1 TPA_asm: Flavobacteriaceae bacterium isolate UBA7949 contig_4655, whole genome shotgun sequence (7673 bp)
Overview 1 RT 1: 85-4917 bp Neighborhood of RT #1 [85, 4928] RVT-AbiP2 HsdR HsdR YhbQ HsdR EcoEI_R_C Feature: gene Location: 85-963 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 88-346 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 88-34 6 bp Feature: gene Location: 1116-1574 bp Feature: gene Location: 1875-4928 bp Feature: domain Description: HsdR Location: 1878-2229 bp Feature: domain Description: HsdR Location: 1878-2229 bp Feature: domain Description: HsdR Location: 2706-2895 bp Feature: domain Description: HsdR Location: 2706-2895 bp Feature: domain Description: YhbQ Location: 3006-3270 bp Feature: domain Description: YhbQ Location: 3006-3270 bp Feature: domain Description: HsdR Location: 3354-4155 bp Feature: domain Description: HsdR Location: 3354 -4 155 bp Feature: domain Description: EcoEI_R_C Location: 4443-4917 bp Feature: domain Description: EcoEI_R_C Location: 4 4 4 3-4 917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdR (COG4096), YhbQ (COG2827), EcoEI_R_C (pfam08463)

Seq: DNYW01000108.1 TPA_asm: Flavobacteriaceae bacterium isolate UBA7949 contig_9110, whole genome shotgun sequence (3141 bp)
Overview 1 RT 1: 3-3138 bp Neighborhood of RT #1 [3, 3138] L1-EN RVT-UNC Feature: gene Location: 3-2468 bp Feature: domain Description: L1-EN Location: 99-744 bp Feature: domain Description: L1-EN Location: 99-744 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1623-2244 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1623-2244 bp Feature: gene Location: 2791-3138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC)