myRT

myRT report for GCA_003508635.1_ASM350863v1

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Seq: DNTZ01000200.1 TPA_asm: Lachnospiraceae bacterium isolate UBA11953 contig_10747, whole genome shotgun sequence (29216 bp)
Overview 1 RT 1: 11907-17772 bp Neighborhood of RT #1 [11907, 17786] COG3421 RVT-AbiA HEPN_AbiA_CTD HTH_XRE Spo0A_C Feature: gene Location: 11907-14600 bp Feature: domain Description: COG3421 Location: 12090-14490 bp Feature: domain Description: COG3421 Location: 1 2090-1 4490 bp Feature: gene Location: 14605-15000 bp Feature: gene Location: 15044-16912 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 15392-15917 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 1 5392-1 591 7 bp Feature: domain Description: HEPN_AbiA_CTD Location: 16514-16901 bp Feature: domain Description: HEPN_AbiA_CTD Location: 1 651 4-1 6901 bp Feature: gene Location: 17088-17423 bp Feature: domain Description: HTH_XRE Location: 17118-17289 bp Feature: domain Description: HTH_XRE Location: 1 71 1 8-1 7289 bp Feature: gene Location: 17523-17786 bp Feature: domain Description: Spo0A_C Location: 17592-17772 bp Feature: domain Description: Spo0A_C Location: 1 7592-1 7772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3421 (Uncharacterized protein ), RVT-AbiA, HEPN_AbiA_CTD (pfam18732), HTH_XRE (smart00530), Spo0A_C (pfam08769)

Seq: DNTZ01000161.1 TPA_asm: Lachnospiraceae bacterium isolate UBA11953 contig_29683, whole genome shotgun sequence (4950 bp)
Overview 1 RT 1: 75-2738 bp Neighborhood of RT #1 [75, 2812] RVT-GII xerS INT_RitC_C_like INT_RitB_C_like Feature: gene Location: 75-224 bp Feature: gene Location: 616-1194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 919-1141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 919-1141 bp Feature: gene Location: 1228-2244 bp Feature: domain Description: xerS Location: 1255-1453 bp Feature: domain Description: xerS Location: 12 55-1453 bp Feature: domain Description: INT_RitC_C_like Location: 1603-2143 bp Feature: domain Description: INT_RitC_C_like Location: 1603-2 143 bp Feature: gene Location: 2237-2812 bp Feature: domain Description: INT_RitB_C_like Location: 2240-2738 bp Feature: domain Description: INT_RitB_C_like Location: 2 2 40-2 738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, xerS (PRK05084), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797)

Seq: DNTZ01000330.1 TPA_asm: Lachnospiraceae bacterium isolate UBA11953 contig_51517, whole genome shotgun sequence (3184 bp)
Overview 1 RT 1: 102-2841 bp Neighborhood of RT #1 [102, 2918] RVT-GII GIIM Phage_int_SAM_3 INT_ICEBs1_C_like Feature: gene Location: 102-251 bp Feature: gene Location: 269-1510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473-1130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473 -113 0 bp Feature: domain Description: GIIM Note: maturase Location: 1211-1430 bp Feature: domain Description: GIIM Note: maturase Location: 1211-143 0 bp Feature: gene Location: 1710-2918 bp Feature: domain Description: Phage_int_SAM_3 Location: 1929-2103 bp Feature: domain Description: Phage_int_SAM_3 Location: 1929-2103 bp Feature: domain Description: INT_ICEBs1_C_like Location: 2298-2841 bp Feature: domain Description: INT_ICEBs1_C_like Location: 2298-2841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189)