myRT

myRT report for GCA_003508815.1_ASM350881v1

Download annotations/find similar RTs

Seq: DODV01000012.1 TPA_asm: Ruminococcus sp. isolate UBA11498 contig_2232, whole genome shotgun sequence (65015 bp)
Overview 1 RT 1: 57763-64300 bp Neighborhood of RT #1 [57763, 64986] RecQ RVT-Retrons AAA_15 AAA_15 Feature: gene Location: 57763-61239 bp Feature: domain Description: RecQ Location: 57841-59518 bp Feature: domain Description: RecQ Location: 57841 -5951 8 bp Feature: gene Location: 61330-61488 bp Feature: gene Location: 61702-62679 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 61864-62413 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 61 864-6241 3 bp Feature: gene Location: 63017-63433 bp Feature: gene Location: 63478-64986 bp Feature: domain Description: AAA_15 Location: 63529-63715 bp Feature: domain Description: AAA_1 5 Location: 63529-6371 5 bp Feature: domain Description: AAA_15 Location: 63883-64300 bp Feature: domain Description: AAA_1 5 Location: 63883-64300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RecQ (COG0514), RVT-Retrons, AAA_15 (pfam13175)

Seq: DODV01000015.1 TPA_asm: Ruminococcus sp. isolate UBA11498 contig_402, whole genome shotgun sequence (79317 bp)
Overview 1 RT 1: 11638-16552 bp Neighborhood of RT #1 [11638, 16566] VirD4 VirD4 RVT-GII TraG-D_C Maff2 Feature: gene Location: 11638-13110 bp Feature: domain Description: VirD4 Location: 11887-12208 bp Feature: domain Description: VirD4 Location: 11887-12 2 08 bp Feature: domain Description: VirD4 Location: 12313-13069 bp Feature: domain Description: VirD4 Location: 12 313-13069 bp Feature: gene Location: 13393-13533 bp Feature: gene Location: 13818-15296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14127-14871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1412 7-14871 bp Feature: gene Location: 15333-16055 bp Feature: domain Description: TraG-D_C Location: 15423-15744 bp Feature: domain Description: TraG-D_C Location: 1542 3-15744 bp Feature: gene Location: 16144-16566 bp Feature: domain Description: Maff2 Location: 16348-16552 bp Feature: domain Description: Maff2 Location: 16348-16552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, TraG-D_C (pfam12696), Maff2 (pfam12750)

Seq: DODV01000016.1 TPA_asm: Ruminococcus sp. isolate UBA11498 contig_507, whole genome shotgun sequence (199525 bp)
Overview 1 RT 1: 16737-20687 bp Neighborhood of RT #1 [16737, 20687] Phage_holin_4_1 RVT-DGRs Avd_like Feature: gene Location: 16737-17183 bp Feature: domain Description: Phage_holin_4_1 Location: 16788-17148 bp Feature: domain Description: Phage_holin_4_1 Location: 16788-17148 bp Feature: gene Location: 17329-17499 bp Feature: gene Location: 17502-18545 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17700-18318 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17700-183 18 bp Feature: gene Location: 18848-19261 bp Feature: domain Description: Avd_like Location: 18893-19238 bp Feature: domain Description: Avd_like Location: 18893 -1923 8 bp Feature: gene Location: 19302-20687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs, Avd_like (cd16376)