myRT

myRT report for GCA_003511865.1_ASM351186v1

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Seq: DOIW01000154.1 TPA_asm: Flavobacterium sp. isolate UBA7958 contig_16953, whole genome shotgun sequence (9251 bp)
Overview 1 RT 1: 3064-8336 bp Neighborhood of RT #1 [3064, 8336] retropepsin_like RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 3064-7080 bp Feature: domain Description: retropepsin_like Location: 3466-3727 bp Feature: domain Description: retropepsin_like Location: 3466-3727 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4708-4849 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4708-4849 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 5164-5515 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 51 64-551 5 bp Feature: domain Description: Integrase_H2C2 Location: 6016-6187 bp Feature: domain Description: Integrase_H2C2 Location: 601 6-61 87 bp Feature: domain Description: rve Location: 6235-6574 bp Feature: domain Description: rve Location: 6235-6574 bp Feature: gene Location: 7134-8336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-UNC/RVT-UG21/RVT-UG11/RVT-UG20(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: DOIW01000230.1 TPA_asm: Flavobacterium sp. isolate UBA7958 contig_18890, whole genome shotgun sequence (6178 bp)
Overview 1 RT 1: 1089-5999 bp Neighborhood of RT #1 [1089, 6175] retropepsin_like RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve zf-CCHC zf-CCHC Feature: gene Location: 1089-1295 bp Feature: gene Location: 1356-1637 bp Feature: gene Location: 2091-5621 bp Feature: domain Description: retropepsin_like Location: 2094-2337 bp Feature: domain Description: retropepsin_like Location: 2 094-2 337 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3321-3444 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 332 1-3444 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3756-4107 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3756-4107 bp Feature: domain Description: Integrase_H2C2 Location: 4590-4758 bp Feature: domain Description: Integrase_H2 C2 Location: 4590-4758 bp Feature: domain Description: rve Location: 4812-5139 bp Feature: domain Description: rve Location: 4812 -5139 bp Feature: gene Location: 5714-6175 bp Feature: domain Description: zf-CCHC Location: 5855-5897 bp Feature: domain Description: zf-CCHC Location: 5855-5897 bp Feature: domain Description: zf-CCHC Location: 5954-5999 bp Feature: domain Description: zf-CCHC Location: 5954-5999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-UG3/RVT-UG20/RVT-UG15/RVT-UG12(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), zf-CCHC (pfam00098)

Seq: DOIW01000150.1 TPA_asm: Flavobacterium sp. isolate UBA7958 contig_4017, whole genome shotgun sequence (7666 bp)
Overview 1 RT 1: 2-2588 bp Neighborhood of RT #1 [2, 2588] retropepsin_like RVT-UNC Retrotrans_gag Feature: gene Location: 2-1396 bp Feature: domain Description: retropepsin_like Location: 47-284 bp Feature: domain Description: retropepsin_like Location: 47-284 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 953-1160 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 953 -1160 bp Feature: gene Location: 1393-2967 bp Feature: domain Description: Retrotrans_gag Location: 1687-1942 bp Feature: domain Description: Retrotrans_gag Location: 1687-1942 bp Feature: gene Location: 2460-2588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-UG11/RVT-DGRs/RVT-UG17/RVT-UG26(RVT-UNC), Retrotrans_gag (pfam03732)