myRT

myRT report for GCA_003511885.1_ASM351188v1

Download annotations/find similar RTs

Seq: DOIX01000413.1 TPA_asm: Cyanobacteria bacterium UBA11153 contig_1412, whole genome shotgun sequence (19037 bp)
Overview 1 RT 1: 15178-19030 bp Neighborhood of RT #1 [15178, 19035] RnaI RVT-CRISPR-like Feature: gene Location: 15178-16251 bp Feature: domain Description: RnaI Location: 15580-16219 bp Feature: domain Description: RnaI Location: 1 5580-1 621 9 bp Feature: gene Location: 16435-17907 bp Feature: gene Location: 18232-19035 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 18520-19030 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 8520-1 9030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RnaI (COG3719), RVT-CRISPR

Seq: DOIX01000408.1 TPA_asm: Cyanobacteria bacterium UBA11153 contig_1418, whole genome shotgun sequence (31186 bp)
Overview 1 RT 1: 25106-27590 bp Neighborhood of RT #1 [25106, 27590] RVT-UG7 Feature: gene Location: 25106-25357 bp Feature: gene Location: 25883-26257 bp Feature: gene Location: 26425-27126 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 26836-27118 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2 6836-2 7118 bp Feature: gene Location: 27134-27391 bp Feature: gene Location: 27369-27590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7

Seq: DOIX01000293.1 TPA_asm: Cyanobacteria bacterium UBA11153 contig_257, whole genome shotgun sequence (18125 bp)
Overview 1 RT 1: 12590-17987 bp Neighborhood of RT #1 [12590, 17989] PRK13927 PRK07459 RVT_N RVT-GII GIIM PRK07459 YggE Feature: gene Location: 12590-13633 bp Feature: domain Description: PRK13927 Location: 12617-13607 bp Feature: domain Description: PRK13 927 Location: 12617-13 607 bp Feature: gene Location: 14440-14604 bp Feature: domain Description: PRK07459 Location: 14443-14590 bp Feature: domain Description: PRK07459 Location: 14443 -14590 bp Feature: gene Location: 15177-16874 bp Feature: domain Description: RVT_N Location: 15219-15465 bp Feature: domain Description: RVT_N Location: 15219-15465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15507-16182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15507-16182 bp Feature: domain Description: GIIM Note: maturase Location: 16254-16482 bp Feature: domain Description: GIIM Note: maturase Location: 16254-16482 bp Feature: gene Location: 17026-17169 bp Feature: domain Description: PRK07459 Location: 17029-17143 bp Feature: domain Description: PRK07459 Location: 17029-17143 bp Feature: gene Location: 17258-17989 bp Feature: domain Description: YggE Location: 17306-17987 bp Feature: domain Description: YggE Location: 173 06-17987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13927 (rod shape-determining protein MreB; Provisional), PRK07459 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YggE (COG2968)

Seq: DOIX01000137.1 TPA_asm: Cyanobacteria bacterium UBA11153 contig_783, whole genome shotgun sequence (40761 bp)
Overview 1 RT 1: 12170-16861 bp Neighborhood of RT #1 [12170, 16866] Rnc RVT-Retrons LCIB_C_CA PRK10841 BaeS Feature: gene Location: 12170-12856 bp Feature: domain Description: Rnc Location: 12185-12842 bp Feature: domain Description: Rnc Location: 12185-1284 2 bp Feature: gene Location: 12901-13041 bp Feature: gene Location: 13054-14463 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13600-14218 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13600-14 218 bp Feature: gene Location: 14593-15393 bp Feature: domain Description: LCIB_C_CA Location: 14707-15343 bp Feature: domain Description: LCIB_C_CA Location: 14 707-1534 3 bp Feature: gene Location: 15571-16866 bp Feature: domain Description: PRK10841 Location: 15595-15931 bp Feature: domain Description: PRK1084 1 Location: 15595-15931 bp Feature: domain Description: BaeS Location: 15940-16861 bp Feature: domain Description: BaeS Location: 1594 0-16861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rnc (COG0571), RVT-Retrons, LCIB_C_CA (pfam18599), PRK10841 (two-component system sensor histidine kinase RcsC), BaeS (COG0642)