myRT

myRT report for GCA_003511965.1_ASM351196v1

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Seq: DOJB01000239.1 TPA_asm: Cyanobacteria bacterium UBA11159 contig_1284, whole genome shotgun sequence (20332 bp)
Overview 1 RT 1: 1061-6263 bp Neighborhood of RT #1 [1061, 6289] YggE PRK07459 RVT_N RVT-GII GIIM PRK07459 PRK13927 Feature: gene Location: 1061-1234 bp Feature: domain Description: YggE Location: 1070-1232 bp Feature: domain Description: YggE Location: 1 070-1 232 bp Feature: gene Location: 1546-1689 bp Feature: domain Description: PRK07459 Location: 1549-1663 bp Feature: domain Description: PRK07459 Location: 1 549-1 663 bp Feature: gene Location: 1841-3538 bp Feature: domain Description: RVT_N Location: 1883-2129 bp Feature: domain Description: RVT_N Location: 1 883-21 29 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2171-2846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 71 -2846 bp Feature: domain Description: GIIM Note: maturase Location: 2918-3146 bp Feature: domain Description: GIIM Note: maturase Location: 291 8-31 46 bp Feature: gene Location: 4111-4275 bp Feature: domain Description: PRK07459 Location: 4114-4261 bp Feature: domain Description: PRK07459 Location: 41 1 4-4261 bp Feature: gene Location: 5246-6289 bp Feature: domain Description: PRK13927 Location: 5273-6263 bp Feature: domain Description: PRK1 3927 Location: 5273-6263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YggE (COG2968), PRK07459 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK13927 (rod shape-determining protein MreB; Provisional)

Seq: DOJB01000225.1 TPA_asm: Cyanobacteria bacterium UBA11159 contig_164, whole genome shotgun sequence (23830 bp)
Overview 1 RT 1: 2453-8839 bp Neighborhood of RT #1 [2453, 8871] Cas2_I_II_III Uma2 RVT-CRISPR Cas1_I-II-III RnaI Feature: gene Location: 2453-2728 bp Feature: domain Description: Cas2_I_II_III Location: 2462-2690 bp Feature: domain Description: Cas2 _I_II_III Location: 2 462 -2 690 bp Feature: gene Location: 2836-3462 bp Feature: domain Description: Uma2 Location: 2869-3430 bp Feature: domain Description: Uma2 Location: 2 869-3430 bp Feature: gene Location: 3580-5928 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3868-4474 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3868-4474 bp Feature: domain Description: Cas1_I-II-III Location: 4936-5890 bp Feature: domain Description: Cas1_I-II-III Location: 4936-5890 bp Feature: gene Location: 6253-7725 bp Feature: gene Location: 7909-8871 bp Feature: domain Description: RnaI Location: 8200-8839 bp Feature: domain Description: RnaI Location: 82 00-8839 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Uma2 (pfam05685), RVT-CRISPR, Cas1_I-II-III (cl00656), RnaI (COG3719)

Seq: DOJB01000149.1 TPA_asm: Cyanobacteria bacterium UBA11159 contig_356, whole genome shotgun sequence (29499 bp)
Overview 1 RT 1: 21423-23907 bp Neighborhood of RT #1 [21423, 23907] RVT-UG7 Feature: gene Location: 21423-21674 bp Feature: gene Location: 22200-22574 bp Feature: gene Location: 22742-23443 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 23153-23435 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 23 153 -23 43 5 bp Feature: gene Location: 23451-23708 bp Feature: gene Location: 23686-23907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7

Seq: DOJB01000335.1 TPA_asm: Cyanobacteria bacterium UBA11159 contig_694, whole genome shotgun sequence (20289 bp)
Overview 1 RT 1: 3418-8100 bp Neighborhood of RT #1 [3418, 8114] PRK10841 BaeS LCIB_C_CA RVT-Retrons Rnc Feature: gene Location: 3418-4713 bp Feature: domain Description: PRK10841 Location: 3442-3778 bp Feature: domain Description: PRK1084 1 Location: 34 4 2-3778 bp Feature: domain Description: BaeS Location: 3787-4708 bp Feature: domain Description: BaeS Location: 3787-4 708 bp Feature: gene Location: 4891-5691 bp Feature: domain Description: LCIB_C_CA Location: 5005-5641 bp Feature: domain Description: LCIB_C_CA Location: 5005-564 1 bp Feature: gene Location: 5821-7230 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6367-6985 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6367-6985 bp Feature: gene Location: 7243-7383 bp Feature: gene Location: 7428-8114 bp Feature: domain Description: Rnc Location: 7443-8100 bp Feature: domain Description: Rnc Location: 74 4 3-8100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10841 (two-component system sensor histidine kinase RcsC), BaeS (COG0642), LCIB_C_CA (pfam18599), RVT-Retrons, Rnc (COG0571)