myRT

myRT report for GCA_003512625.1_ASM351262v1

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Seq: DOPT01000031.1 TPA_asm: Herpetosiphon sp. isolate UBA8869 contig_2035, whole genome shotgun sequence (54415 bp)
Overview 1 RT 1: 49031-54414 bp Neighborhood of RT #1 [49031, 54414] DUF4386 NB-ARC TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 RVT_N RVT-GII YkfC HNHc Feature: gene Location: 49031-49690 bp Feature: domain Description: DUF4386 Location: 49061-49649 bp Feature: domain Description: DUF4386 Location: 49061 -49649 bp Feature: gene Location: 49775-52141 bp Feature: domain Description: NB-ARC Location: 50036-50609 bp Feature: domain Description: NB-ARC Location: 50036-50609 bp Feature: domain Description: TPR_10 Location: 51119-51206 bp Feature: domain Description: TPR_1 0 Location: 51 1 1 9-51 206 bp Feature: domain Description: TPR_10 Location: 51215-51335 bp Feature: domain Description: TPR_1 0 Location: 51 21 5-51 335 bp Feature: domain Description: TPR_10 Location: 51368-51461 bp Feature: domain Description: TPR_1 0 Location: 51 368-51 461 bp Feature: domain Description: TPR_10 Location: 51473-51587 bp Feature: domain Description: TPR_1 0 Location: 51 473-51 587 bp Feature: domain Description: TPR_10 Location: 51590-51710 bp Feature: domain Description: TPR_1 0 Location: 51 590-51 71 0 bp Feature: domain Description: TPR_10 Location: 51716-51839 bp Feature: domain Description: TPR_1 0 Location: 51 71 6-51 839 bp Feature: domain Description: TPR_10 Location: 51848-51965 bp Feature: domain Description: TPR_1 0 Location: 51 848-51 965 bp Feature: domain Description: TPR_10 Location: 51971-52085 bp Feature: domain Description: TPR_1 0 Location: 51 971 -52085 bp Feature: gene Location: 52120-53802 bp Feature: domain Description: RVT_N Location: 52171-52414 bp Feature: domain Description: RVT_N Location: 521 71 -5241 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52459-53101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52459-531 01 bp Feature: domain Description: YkfC Location: 53104-53395 bp Feature: domain Description: YkfC Location: 531 04-53395 bp Feature: domain Description: HNHc Note: nucleases Location: 53596-53755 bp Feature: domain Description: HNHc Note: nucleases Location: 53596-53755 bp Feature: gene Location: 54062-54238 bp Feature: gene Location: 54247-54414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4386 (pfam14329), NB-ARC (pfam00931), TPR_10 (pfam13374), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: DOPT01000038.1 TPA_asm: Herpetosiphon sp. isolate UBA8869 contig_2756, whole genome shotgun sequence (74648 bp)
Overview 1 RT 1: 47163-52870 bp Neighborhood of RT #1 [47163, 53157] TIGR03986 RVT-GII Intron_maturas2 KOG4768 Csx1_III-U Feature: gene Location: 47163-49322 bp Feature: domain Description: TIGR03986 Location: 47217-49053 bp Feature: domain Description: TIGR03986 Location: 472 17-49053 bp Feature: gene Location: 49588-49770 bp Feature: gene Location: 49837-51624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50098-50893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50098-50893 bp Feature: domain Description: Intron_maturas2 Location: 50995-51211 bp Feature: domain Description: Intron_maturas2 Location: 50995-512 11 bp Feature: domain Description: KOG4768 Location: 51421-51598 bp Feature: domain Description: KOG4768 Location: 5142 1-51598 bp Feature: gene Location: 51646-51894 bp Feature: gene Location: 51904-53157 bp Feature: domain Description: Csx1_III-U Location: 51919-52870 bp Feature: domain Description: Csx1_III-U Location: 51919-52 870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR03986 (CRISPR-associated protein), RVT-GII, Intron_maturas2 (pfam01348), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Csx1_III-U (cl21570)

Seq: DOPT01000046.1 TPA_asm: Herpetosiphon sp. isolate UBA8869 contig_3156, whole genome shotgun sequence (172422 bp)
Overview 1 RT 1: 96-5415 bp Neighborhood of RT #1 [96, 5415] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR RVT-CRISPR Feature: gene Location: 96-374 bp Feature: domain Description: Cas2_I_II_III Location: 105-330 bp Feature: domain Description: Cas2_I_II_III Location: 105-3 3 0 bp Feature: gene Location: 646-1647 bp Feature: domain Description: Cas1_I-II-III Location: 655-1609 bp Feature: domain Description: Cas1_I-II-III Location: 655-1609 bp Feature: gene Location: 1731-3026 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1974-2313 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1974-23 13 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2655-2922 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2655-2922 bp Feature: gene Location: 3010-3972 bp Feature: gene Location: 3991-5415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR

Seq: DOPT01000069.1 TPA_asm: Herpetosiphon sp. isolate UBA8869 contig_3548, whole genome shotgun sequence (146947 bp)
Overview 1 RT 1: 34614-41777 bp Neighborhood of RT #1 [34614, 41815] CopC PcoD PLN02245 RVT-CRISPR-like APH YigB Feature: gene Location: 34614-36329 bp Feature: domain Description: CopC Location: 34629-34968 bp Feature: domain Description: CopC Location: 34 629-34 968 bp Feature: domain Description: PcoD Location: 35130-35943 bp Feature: domain Description: PcoD Location: 35130-3594 3 bp Feature: gene Location: 36329-37330 bp Feature: domain Description: PLN02245 Location: 36335-37307 bp Feature: domain Description: PLN0224 5 Location: 36335-37307 bp Feature: gene Location: 37359-39719 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 38526-38937 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 38526-38937 bp Feature: gene Location: 40116-41126 bp Feature: domain Description: APH Location: 40326-40968 bp Feature: domain Description: APH Location: 4 0326-4 0968 bp Feature: gene Location: 41108-41815 bp Feature: domain Description: YigB Location: 41126-41777 bp Feature: domain Description: YigB Location: 4 1126-4 1777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CopC (pfam04234), PcoD (COG1276), PLN02245 (ATP phosphoribosyl transferase), RVT-CRISPR, APH (pfam01636), YigB (COG1011)