myRT

myRT report for GCA_003512645.1_ASM351264v1

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Seq: DOPS01000255.1 TPA_asm: Desulfosporosinus sp. isolate UBA8488 contig_1313, whole genome shotgun sequence (10847 bp)
Overview 1 RT 1: 7321-10584 bp Neighborhood of RT #1 [7321, 10584] Cupin_2 PRK11924 RVT-GII Intron_maturas2 Feature: gene Location: 7321-7695 bp Feature: domain Description: Cupin_2 Location: 7489-7660 bp Feature: domain Description: Cupin_2 Location: 7489-7660 bp Feature: gene Location: 8084-8932 bp Feature: domain Description: PRK11924 Location: 8399-8759 bp Feature: domain Description: PRK1 1 924 Location: 8399-8759 bp Feature: gene Location: 9396-10244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9411-9537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941 1 -9537 bp Feature: domain Description: Intron_maturas2 Location: 9621-9912 bp Feature: domain Description: Intron_maturas2 Location: 9621 -991 2 bp Feature: gene Location: 10447-10584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cupin_2 (pfam07883), PRK11924 (RNA polymerase sigma factor; Provisional), RVT-GII, Intron_maturas2 (pfam01348)

Seq: DOPS01000134.1 TPA_asm: Desulfosporosinus sp. isolate UBA8488 contig_1973, whole genome shotgun sequence (11896 bp)
Overview 1 RT 1: 1-1856 bp Neighborhood of RT #1 [1, 1972] RVT-GII rSAM_BssD Putative_PNPOx Feature: gene Location: 1-342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-2 50 bp Feature: gene Location: 546-1535 bp Feature: domain Description: rSAM_BssD Location: 594-1530 bp Feature: domain Description: rSAM_BssD Location: 594-1530 bp Feature: gene Location: 1589-1972 bp Feature: domain Description: Putative_PNPOx Location: 1604-1856 bp Feature: domain Description: Putative_PNPOx Location: 1604-1856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, rSAM_BssD (TIGR04003), Putative_PNPOx (pfam01243)

Seq: DOPS01000320.1 TPA_asm: Desulfosporosinus sp. isolate UBA8488 contig_2328, whole genome shotgun sequence (11760 bp)
Overview 1 RT 1: 7722-11447 bp Neighborhood of RT #1 [7722, 11447] DUF2922 RVT-GII Feature: gene Location: 7722-7961 bp Feature: domain Description: DUF2922 Location: 7743-7941 bp Feature: domain Description: DUF2922 Location: 7743 -7941 bp Feature: gene Location: 8016-8165 bp Feature: gene Location: 8521-10332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8830-9532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883 0-953 2 bp Feature: gene Location: 10460-10642 bp Feature: gene Location: 11208-11447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2922 (pfam11148), RVT-GII

Seq: DOPS01000377.1 TPA_asm: Desulfosporosinus sp. isolate UBA8488 contig_246, whole genome shotgun sequence (14970 bp)
Overview 1 RT 1: 6834-11338 bp Neighborhood of RT #1 [6834, 11418] FrhD HTH_ARSR am_tr_V_EF2568 RVT-GII Intron_maturas2 PBP2_NikA_DppA_OppA_like_21 Feature: gene Location: 6834-7601 bp Feature: domain Description: FrhD Location: 6861-7245 bp Feature: domain Description: FrhD Location: 6861-724 5 bp Feature: domain Description: HTH_ARSR Location: 7446-7590 bp Feature: domain Description: HTH_ARSR Location: 74 4 6-7590 bp Feature: gene Location: 8250-8996 bp Feature: domain Description: am_tr_V_EF2568 Location: 8253-8985 bp Feature: domain Description: am_tr_V_EF2568 Location: 8253-8985 bp Feature: gene Location: 9104-9985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9107-9878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9107-9878 bp Feature: gene Location: 9992-10396 bp Feature: domain Description: Intron_maturas2 Location: 10007-10316 bp Feature: domain Description: Intron_maturas2 Location: 10007-10316 bp Feature: gene Location: 10564-11418 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_21 Location: 10573-11338 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_21 Location: 10573-11338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FrhD (COG1908), HTH_ARSR (smart00418), am_tr_V_EF2568 (TIGR01977), RVT-GII, Intron_maturas2 (pfam01348), PBP2_NikA_DppA_OppA_like_21 (cd08520)

Seq: DOPS01000228.1 TPA_asm: Desulfosporosinus sp. isolate UBA8488 contig_329, whole genome shotgun sequence (10079 bp)
Overview 1 RT 1: 3-4233 bp Neighborhood of RT #1 [3, 4233] YdiF RVT-GII thiolase RT_G2_intron Feature: gene Location: 3-137 bp Feature: gene Location: 156-1757 bp Feature: domain Description: YdiF Location: 189-1746 bp Feature: domain Description: YdiF Location: 189-1746 bp Feature: gene Location: 2054-2797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2057-2492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205 7-2492 bp Feature: gene Location: 2877-3548 bp Feature: domain Description: thiolase Location: 2880-3378 bp Feature: domain Description: thiolase Location: 2880-3378 bp Feature: domain Description: RT_G2_intron Location: 3390-3543 bp Feature: domain Description: RT_G2_intron Location: 3390-35 43 bp Feature: gene Location: 3931-4233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdiF (COG4670), RVT-GII, thiolase (PRK06158), RT_G2_intron (cd01651)

Seq: DOPS01000099.1 TPA_asm: Desulfosporosinus sp. isolate UBA8488 contig_4062, whole genome shotgun sequence (15736 bp)
Overview 1 RT 1: 12796-15708 bp Neighborhood of RT #1 [12796, 15734] Acetyltransf_10 RVT-GII GIIM RVT-GII Feature: gene Location: 12796-12954 bp Feature: gene Location: 13328-13828 bp Feature: domain Description: Acetyltransf_10 Location: 13493-13769 bp Feature: domain Description: Acetyltransf_10 Location: 13493-1376 9 bp Feature: gene Location: 13986-14549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13995-14178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13995-14178 bp Feature: domain Description: GIIM Note: maturase Location: 14268-14451 bp Feature: domain Description: GIIM Note: maturase Location: 1426 8-14451 bp Feature: gene Location: 14946-15734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15321-15708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15321-15708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_10 (pfam13673), RVT-GII, GIIM (pfam08388)

Seq: DOPS01000105.1 TPA_asm: Desulfosporosinus sp. isolate UBA8488 contig_4393, whole genome shotgun sequence (3408 bp)
Overview 1 RT 1: 358-2894 bp Neighborhood of RT #1 [358, 2894] DUF1540 RVT-GII GIIM Feature: gene Location: 358-513 bp Feature: domain Description: DUF1540 Location: 379-502 bp Feature: domain Description: DUF1540 Location: 37 9-502 bp Feature: gene Location: 1155-2513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1473-2142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147 3-2142 bp Feature: domain Description: GIIM Note: maturase Location: 2235-2415 bp Feature: domain Description: GIIM Note: maturase Location: 2235-2415 bp Feature: gene Location: 2661-2894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1540 (pfam07561), RVT-GII, GIIM (pfam08388)

Seq: DOPS01000290.1 TPA_asm: Desulfosporosinus sp. isolate UBA8488 contig_5245, whole genome shotgun sequence (3447 bp)
Overview 1 RT 1: 141-2587 bp Neighborhood of RT #1 [141, 2587] RVT-GII GIIM Feature: gene Location: 141-1730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 525-1194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 525-1194 bp Feature: domain Description: GIIM Note: maturase Location: 1248-1434 bp Feature: domain Description: GIIM Note: maturase Location: 1248 -1434 bp Feature: gene Location: 1841-2047 bp Feature: gene Location: 2243-2587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: DOPS01000118.1 TPA_asm: Desulfosporosinus sp. isolate UBA8488 contig_653, whole genome shotgun sequence (41852 bp)
Overview 1 RT 1: 1417-6284 bp Neighborhood of RT #1 [1417, 6310] AFOR_C DMSOR_beta_like RVT-GII AslB AslB MoeA Feature: gene Location: 1417-2802 bp Feature: domain Description: AFOR_C Location: 1432-2329 bp Feature: domain Description: AFOR_C Location: 1432-2329 bp Feature: domain Description: DMSOR_beta_like Location: 2332-2668 bp Feature: domain Description: DMSOR_beta_like Location: 2332-2668 bp Feature: gene Location: 3041-3985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3284-3881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3284-3881 bp Feature: gene Location: 3987-5090 bp Feature: domain Description: AslB Location: 4113-4413 bp Feature: domain Description: AslB Location: 4113-4413 bp Feature: domain Description: AslB Location: 4515-5055 bp Feature: domain Description: AslB Location: 4515-5055 bp Feature: gene Location: 5105-6310 bp Feature: domain Description: MoeA Location: 5129-6284 bp Feature: domain Description: MoeA Location: 5129 -6284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AFOR_C (pfam01314), DMSOR_beta_like (cd16374), RVT-GII, AslB (COG0641), MoeA (COG0303)