myRT

myRT report for GCA_003514265.1_ASM351426v1

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Seq: DORN01000079.1 TPA_asm: Propionibacteriaceae bacterium isolate UBA11038 contig_1453, whole genome shotgun sequence (16679 bp)
Overview 1 RT 1: 10010-15621 bp Neighborhood of RT #1 [10010, 15621] CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 10010-10750 bp Feature: gene Location: 10888-11628 bp Feature: domain Description: CRISPR_Cas6 Location: 11236-11590 bp Feature: domain Description: CRISPR_Cas6 Location: 1 1 236-1 1 590 bp Feature: gene Location: 11625-13499 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 11835-12438 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 1 835-1 2438 bp Feature: domain Description: Cas1_I-II-III Location: 12507-13464 bp Feature: domain Description: Cas1 _I-II-III Location: 1 2507-1 3464 bp Feature: gene Location: 13490-13774 bp Feature: domain Description: Cas2_I_II_III Location: 13508-13736 bp Feature: domain Description: Cas2_I_II_III Location: 1 3508-1 3736 bp Feature: gene Location: 15115-15621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: DORN01000113.1 TPA_asm: Propionibacteriaceae bacterium isolate UBA11038 contig_4800, whole genome shotgun sequence (8334 bp)
Overview 1 RT 1: 109-4603 bp Neighborhood of RT #1 [109, 4635] zf-ISL3 RVT-GII GIIM COG3464 COG3547 Feature: gene Location: 109-546 bp Feature: domain Description: zf-ISL3 Location: 142-226 bp Feature: domain Description: zf-ISL3 Location: 142 -2 2 6 bp Feature: gene Location: 1021-2556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1405-2089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1405-2 089 bp Feature: domain Description: GIIM Note: maturase Location: 2161-2362 bp Feature: domain Description: GIIM Note: maturase Location: 2 161-2 362 bp Feature: gene Location: 2925-3467 bp Feature: domain Description: COG3464 Location: 3060-3261 bp Feature: domain Description: COG3464 Location: 3060-32 61 bp Feature: gene Location: 3565-4635 bp Feature: domain Description: COG3547 Location: 3598-4603 bp Feature: domain Description: COG3547 Location: 3598-4603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-ISL3 (pfam14690), RVT-GII, GIIM (pfam08388), COG3464 (Transposase ), COG3547 (Transposase )

Seq: DORN01000234.1 TPA_asm: Propionibacteriaceae bacterium isolate UBA11038 contig_8036, whole genome shotgun sequence (19276 bp)
Overview 1 RT 1: 3223-9682 bp Neighborhood of RT #1 [3223, 9738] COG4584 InsE PHA02517 RVT-GII GIIM PHA02517 ARA1 Feature: gene Location: 3223-4968 bp Feature: domain Description: COG4584 Location: 3343-4003 bp Feature: domain Description: COG4584 Location: 3 3 43 -4003 bp Feature: domain Description: InsE Location: 4645-4942 bp Feature: domain Description: InsE Location: 4645-4942 bp Feature: gene Location: 4955-5476 bp Feature: domain Description: PHA02517 Location: 5180-5402 bp Feature: domain Description: PHA02517 Location: 5180-5402 bp Feature: gene Location: 6025-7452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6343-7030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 43 -703 0 bp Feature: domain Description: GIIM Note: maturase Location: 7105-7330 bp Feature: domain Description: GIIM Note: maturase Location: 7105-73 3 0 bp Feature: gene Location: 7471-8073 bp Feature: domain Description: PHA02517 Location: 7564-8050 bp Feature: domain Description: PHA02517 Location: 7564-8050 bp Feature: gene Location: 8854-9738 bp Feature: domain Description: ARA1 Location: 8863-9682 bp Feature: domain Description: ARA1 Location: 8863 -9682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ARA1 (COG0656)