myRT

myRT report for GCA_003514525.1_ASM351452v1

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Seq: DOPZ01000032.1 TPA_asm: Nostoc sp. UBA8866 contig_2051, whole genome shotgun sequence (50547 bp)
Overview 1 RT 1: 23956-26580 bp Neighborhood of RT #1 [23956, 26580] COG4634 RVT-Retrons HTH_XRE Feature: gene Location: 23956-24288 bp Feature: domain Description: COG4634 Location: 23959-24283 bp Feature: domain Description: COG4634 Location: 23959-24283 bp Feature: gene Location: 24369-25115 bp Feature: gene Location: 25152-26012 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25263-25800 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25263-25800 bp Feature: gene Location: 26053-26340 bp Feature: domain Description: HTH_XRE Location: 26074-26206 bp Feature: domain Description: HTH_XRE Location: 26074-26206 bp Feature: gene Location: 26419-26580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4634 (Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component ), RVT-Retrons, HTH_XRE (smart00530)

Seq: DOPZ01000112.1 TPA_asm: Nostoc sp. UBA8866 contig_2109, whole genome shotgun sequence (51500 bp)
Overview 1 RT 1: 34420-37526 bp Neighborhood of RT #1 [34420, 37546] RVT-DGRs Avd_like YfmG Feature: gene Location: 34420-34623 bp Feature: gene Location: 34711-34854 bp Feature: gene Location: 35077-36135 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35284-35929 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 352 84-3592 9 bp Feature: gene Location: 36153-36497 bp Feature: domain Description: Avd_like Location: 36171-36477 bp Feature: domain Description: Avd_like Location: 36171-36477 bp Feature: gene Location: 36707-37546 bp Feature: domain Description: YfmG Location: 36764-37526 bp Feature: domain Description: YfmG Location: 36764-3752 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)

Seq: DOPZ01000103.1 TPA_asm: Nostoc sp. UBA8866 contig_2239, whole genome shotgun sequence (28360 bp)
Overview 1 RT 1: 223-3405 bp Neighborhood of RT #1 [223, 3410] RVT-DGRs DUF3598 hisS Feature: gene Location: 223-1119 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 262-904 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 262-904 bp Feature: gene Location: 1454-1897 bp Feature: domain Description: DUF3598 Location: 1484-1889 bp Feature: domain Description: DUF3 598 Location: 1484-1889 bp Feature: gene Location: 2022-3410 bp Feature: domain Description: hisS Location: 2043-3405 bp Feature: domain Description: hisS Location: 2043 -3 405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF3598 (pfam12204), hisS (TIGR00442)

Seq: DOPZ01000111.1 TPA_asm: Nostoc sp. UBA8866 contig_4272, whole genome shotgun sequence (81988 bp)
Overview 1 RT 1: 594-5316 bp Neighborhood of RT #1 [594, 5316] RVT-CRISPR cas1 HTH_XRE DUF4384 Feature: gene Location: 594-740 bp Feature: gene Location: 1596-3602 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1782-2391 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1782-2391 bp Feature: domain Description: cas1 Location: 2607-3576 bp Feature: domain Description: cas1 Location: 2607-3576 bp Feature: gene Location: 4100-4843 bp Feature: domain Description: HTH_XRE Location: 4148-4295 bp Feature: domain Description: HTH_XRE Location: 4 14 8-4 295 bp Feature: domain Description: DUF4384 Location: 4469-4700 bp Feature: domain Description: DUF4 384 Location: 4 4 69-4 700 bp Feature: gene Location: 5167-5316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, cas1 (TIGR00287), HTH_XRE (smart00530), DUF4384 (pfam14326)

Seq: DOPZ01000045.1 TPA_asm: Nostoc sp. UBA8866 contig_5534, whole genome shotgun sequence (45780 bp)
Overview 1 RT 1: 1639-7274 bp Neighborhood of RT #1 [1639, 7274] RVT_N RVT-GII McrA InsQ Feature: gene Location: 1639-2058 bp Feature: gene Location: 2285-2983 bp Feature: gene Location: 3086-4663 bp Feature: domain Description: RVT_N Location: 3119-3362 bp Feature: domain Description: RVT_N Location: 3119-3362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3416-4070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3416-4070 bp Feature: domain Description: McrA Location: 4301-4640 bp Feature: domain Description: McrA Location: 4301-4640 bp Feature: gene Location: 5303-6634 bp Feature: domain Description: InsQ Location: 5396-6506 bp Feature: domain Description: InsQ Location: 5 396-65 06 bp Feature: gene Location: 6756-7274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), InsQ (COG0675)