myRT

myRT report for GCA_003515685.1_ASM351568v1

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Seq: QWEG01000012.1 Bacillus notoginsengisoli strain JCM 30743 NODE_12_length_170063_cov_33.5754, whole genome shotgun sequence (170063 bp)
Overview 1 RT 1: 146401-151353 bp Neighborhood of RT #1 [146401, 151353] xerC RVT-GII GIIM DUF5626 Feature: gene Location: 146401-146763 bp Feature: gene Location: 147250-148413 bp Feature: domain Description: xerC Location: 147466-148369 bp Feature: domain Description: xerC Location: 1 47466-1 48369 bp Feature: gene Location: 148574-149848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148775-149390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 48775-1 49390 bp Feature: domain Description: GIIM Note: maturase Location: 149450-149660 bp Feature: domain Description: GIIM Note: maturase Location: 1 49450-1 49660 bp Feature: gene Location: 150476-151048 bp Feature: domain Description: DUF5626 Location: 150605-151034 bp Feature: domain Description: DUF5626 Location: 1 50605-1 51 034 bp Feature: gene Location: 151201-151353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT xerC (PRK01287), RVT-GII, GIIM (pfam08388), DUF5626 (pfam18540)

Seq: QWEG01000032.1 Bacillus notoginsengisoli strain JCM 30743 NODE_32_length_5368_cov_0.518413, whole genome shotgun sequence (5368 bp)
Overview 1 RT 1: 3-4977 bp Neighborhood of RT #1 [3, 4977] retropepsin_like RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve CD_CSD Feature: gene Location: 3-617 bp Feature: gene Location: 614-4396 bp Feature: domain Description: retropepsin_like Location: 938-1196 bp Feature: domain Description: retropepsin_like Location: 938-1196 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1919-2114 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1919-2 114 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2405-2762 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2 405-2 762 bp Feature: domain Description: Integrase_H2C2 Location: 3005-3173 bp Feature: domain Description: Integrase_H2 C2 Location: 3005-3173 bp Feature: domain Description: rve Location: 3233-3563 bp Feature: domain Description: rve Location: 32 33-3563 bp Feature: domain Description: CD_CSD Location: 4118-4265 bp Feature: domain Description: CD_CSD Location: 4118-42 65 bp Feature: gene Location: 4598-4789 bp Feature: gene Location: 4825-4977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-UG11/RVT-UG26/RVT-UG17/RVT-UG25(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), CD_CSD (cl28914)

Seq: QWEG01000036.1 Bacillus notoginsengisoli strain JCM 30743 NODE_36_length_1908_cov_700.635, whole genome shotgun sequence (1908 bp)
Overview 1 RT 1: 429-1659 bp Neighborhood of RT #1 [429, 1727] RVT-GII GIIM Feature: gene Location: 429-1727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 735-1365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 5-13 65 bp Feature: domain Description: GIIM Note: maturase Location: 1446-1659 bp Feature: domain Description: GIIM Note: maturase Location: 1446-1659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QWEG01000041.1 Bacillus notoginsengisoli strain JCM 30743 NODE_41_length_1520_cov_0.528356, whole genome shotgun sequence (1520 bp)
Overview 1 RT 1: 3-1515 bp Neighborhood of RT #1 [3, 1517] RNase_HI_RT_Ty3 Integrase_H2C2 RVT-UNC RT_RNaseH_2 Feature: gene Location: 3-527 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 6-126 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 6-126 bp Feature: domain Description: Integrase_H2C2 Location: 345-510 bp Feature: domain Description: Integrase_H2C2 Location: 34 5-510 bp Feature: gene Location: 594-1517 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 852-1047 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 852-104 7 bp Feature: domain Description: RT_RNaseH_2 Location: 1251-1515 bp Feature: domain Description: RT_RNaseH_2 Location: 1251-1515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), RVT-UG11/RVT-UG4/RVT-DGRs/RVT-UG26(RVT-UNC), RT_RNaseH_2 (pfam17919)