myRT

myRT report for GCA_003516465.1_ASM351646v1

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Seq: DPCN01000021.1 TPA_asm: Geobacter sp. isolate UBA8499 contig_209563, whole genome shotgun sequence (45532 bp)
Overview 1 RT 1: 3261-7746 bp Neighborhood of RT #1 [3261, 7778] COG4951 SSL2 PLDc_C_DEXD_like RVT-GII UPF0158 PRK00215 Feature: gene Location: 3261-6197 bp Feature: domain Description: COG4951 Location: 3495-4476 bp Feature: domain Description: COG4951 Location: 3495-4476 bp Feature: domain Description: SSL2 Location: 4578-5724 bp Feature: domain Description: SSL2 Location: 4578-5724 bp Feature: domain Description: PLDc_C_DEXD_like Location: 5784-6177 bp Feature: domain Description: PLDc_C_DEXD_like Location: 5784-61 77 bp Feature: gene Location: 6246-6395 bp Feature: gene Location: 6389-6640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6443-6590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6443-6590 bp Feature: gene Location: 6818-7471 bp Feature: domain Description: UPF0158 Location: 7250-7457 bp Feature: domain Description: UPF01 58 Location: 7250-7457 bp Feature: gene Location: 7539-7778 bp Feature: domain Description: PRK00215 Location: 7554-7746 bp Feature: domain Description: PRK0021 5 Location: 7554-7746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4951 (Uncharacterized protein ), SSL2 (COG1061), PLDc_C_DEXD_like (cd09126), RVT-GII, UPF0158 (pfam03682), PRK00215 (transcriptional repressor LexA)

Seq: DPCN01000023.1 TPA_asm: Geobacter sp. isolate UBA8499 contig_262277, whole genome shotgun sequence (14086 bp)
Overview 1 RT 1: 11462-13859 bp Neighborhood of RT #1 [11462, 14041] HTH_37 TPR RVT-GII GIIM Feature: gene Location: 11462-11764 bp Feature: domain Description: HTH_37 Location: 11558-11729 bp Feature: domain Description: HTH_37 Location: 11558-1172 9 bp Feature: gene Location: 11941-12546 bp Feature: domain Description: TPR Location: 12058-12322 bp Feature: domain Description: TPR Location: 12 058-12 32 2 bp Feature: gene Location: 12641-14041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12977-13595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 977-13595 bp Feature: domain Description: GIIM Note: maturase Location: 13649-13859 bp Feature: domain Description: GIIM Note: maturase Location: 13649-13859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_37 (pfam13744), TPR (smart00028), RVT-GII, GIIM (pfam08388)

Seq: DPCN01000038.1 TPA_asm: Geobacter sp. isolate UBA8499 contig_30748, whole genome shotgun sequence (101689 bp)
Overview 1 RT 1: 53571-60056 bp Neighborhood of RT #1 [53571, 60056] DEXDc Z1 RVT_N RVT-GII GIIM Feature: gene Location: 53571-55688 bp Feature: domain Description: DEXDc Location: 53661-54228 bp Feature: domain Description: DEXDc Location: 53 661-54228 bp Feature: domain Description: Z1 Location: 54444-55071 bp Feature: domain Description: Z1 Location: 54444-55071 bp Feature: gene Location: 55814-56671 bp Feature: gene Location: 56834-58306 bp Feature: RT Description: RVT_N Location: 56888-57131 bp Feature: RT Description: RVT_N Location: 56888-5713 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57176-57800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57176-57800 bp Feature: domain Description: GIIM Note: maturase Location: 57854-58085 bp Feature: domain Description: GIIM Note: maturase Location: 57854-58085 bp Feature: gene Location: 58148-58597 bp Feature: gene Location: 59124-60056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXDc (smart00487), Z1 (pfam10593), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)