myRT

myRT report for GCA_003517915.1_ASM351791v1

Download annotations/find similar RTs

Seq: DOZQ01000034.1 TPA_asm: Ruminococcaceae bacterium isolate UBA8129 contig_124290, whole genome shotgun sequence (2799 bp)
Overview 1 RT 1: 2-2545 bp Neighborhood of RT #1 [2, 2562] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2-220 bp Feature: gene Location: 425-640 bp Feature: gene Location: 760-2562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1027-1843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 027-1 843 bp Feature: domain Description: Intron_maturas2 Location: 1933-2230 bp Feature: domain Description: Intron_maturas2 Location: 1 933-2230 bp Feature: domain Description: HNHc Note: nucleases Location: 2395-2545 bp Feature: domain Description: HNHc Note: nucleases Location: 2395-2545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: DOZQ01000208.1 TPA_asm: Ruminococcaceae bacterium isolate UBA8129 contig_159969, whole genome shotgun sequence (2611 bp)
Overview 1 RT 1: 3-2237 bp Neighborhood of RT #1 [3, 2371] RVT-GII HNHc Feature: gene Location: 3-137 bp Feature: gene Location: 229-513 bp Feature: gene Location: 650-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 770-1511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 770-1511 bp Feature: domain Description: HNHc Note: nucleases Location: 2105-2237 bp Feature: domain Description: HNHc Note: nucleases Location: 2 105-2 2 37 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: DOZQ01000023.1 TPA_asm: Ruminococcaceae bacterium isolate UBA8129 contig_230700, whole genome shotgun sequence (2838 bp)
Overview 1 RT 1: 3-2796 bp Neighborhood of RT #1 [3, 2837] RVT-GII Intron_maturas2 HNHc DEXHc_Snf Feature: gene Location: 3-230 bp Feature: gene Location: 265-2067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 550-1357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 550-13 57 bp Feature: domain Description: Intron_maturas2 Location: 1543-1726 bp Feature: domain Description: Intron_maturas2 Location: 1543 -1726 bp Feature: domain Description: HNHc Note: nucleases Location: 1900-2050 bp Feature: domain Description: HNHc Note: nucleases Location: 1900-2050 bp Feature: gene Location: 2589-2837 bp Feature: domain Description: DEXHc_Snf Location: 2595-2796 bp Feature: domain Description: DEXHc_Snf Location: 2595-2796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: DOZQ01000136.1 TPA_asm: Ruminococcaceae bacterium isolate UBA8129 contig_7932, whole genome shotgun sequence (7745 bp)
Overview 1 RT 1: 2067-6185 bp Neighborhood of RT #1 [2067, 6250] DEXDc_RapA SNF2_N SF2_C_SNF RVT-GII RMtype1_S_PluTORF4319P-TRD2-CR2_like PhdYeFM_antitox Feature: gene Location: 2067-2339 bp Feature: domain Description: DEXDc_RapA Location: 2196-2331 bp Feature: domain Description: DEXDc_RapA Location: 2196-2331 bp Feature: gene Location: 2496-4721 bp Feature: domain Description: SNF2_N Location: 2508-2961 bp Feature: domain Description: SNF2_N Location: 2508-2961 bp Feature: domain Description: SF2_C_SNF Location: 3048-3492 bp Feature: domain Description: SF2_C_SNF Location: 304 8-34 92 bp Feature: gene Location: 4758-5108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4761-5082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 761-5082 bp Feature: gene Location: 5186-5731 bp Feature: domain Description: RMtype1_S_PluTORF4319P-TRD2-CR2_like Location: 5276-5720 bp Feature: domain Description: RMtype1_S_PluTORF4 319P-TRD2-CR2_like Location: 5276-5720 bp Feature: gene Location: 5993-6250 bp Feature: domain Description: PhdYeFM_antitox Location: 5999-6185 bp Feature: domain Description: PhdYeFM_antitox Location: 5999-6185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXDc_RapA (cd18011), SNF2_N (pfam00176), SF2_C_SNF (cd18793), RVT-GII, RMtype1_S_PluTORF4319P-TRD2-CR2_like (cd17269), PhdYeFM_antitox (pfam02604)