myRT

myRT report for GCA_003520175.1_ASM352017v1

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Seq: DOVI01000024.1 TPA_asm: Lachnospiraceae bacterium isolate UBA11537 contig_11080, whole genome shotgun sequence (7137 bp)
Overview 1 RT 1: 3-3042 bp Neighborhood of RT #1 [3, 3677] RVT-GII GIIM BID_2 Feature: gene Location: 3-620 bp Feature: gene Location: 753-2165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1104-1725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 04-1 725 bp Feature: domain Description: GIIM Note: maturase Location: 1776-2004 bp Feature: domain Description: GIIM Note: maturase Location: 1 776-2004 bp Feature: gene Location: 2171-2515 bp Feature: gene Location: 2643-3677 bp Feature: domain Description: BID_2 Location: 2868-3042 bp Feature: domain Description: BID_2 Location: 2868-3042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), BID_2 (smart00635)

Seq: DOVI01000144.1 TPA_asm: Lachnospiraceae bacterium isolate UBA11537 contig_4875, whole genome shotgun sequence (4207 bp)
Overview 1 RT 1: 151-3815 bp Neighborhood of RT #1 [151, 4204] YsxB-like rplU RVT-GII VirE Feature: gene Location: 151-468 bp Feature: domain Description: YsxB-like Location: 154-460 bp Feature: domain Description: YsxB-like Location: 154-460 bp Feature: gene Location: 694-897 bp Feature: domain Description: rplU Location: 697-886 bp Feature: domain Description: rplU Location: 697-886 bp Feature: gene Location: 1030-3168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1234-1855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 34-1855 bp Feature: gene Location: 3125-4204 bp Feature: domain Description: VirE Location: 3224-3815 bp Feature: domain Description: VirE Location: 32 2 4-3815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YsxB-like, rplU (PRK05573), RVT-GII, VirE (pfam05272)

Seq: DOVI01000103.1 TPA_asm: Lachnospiraceae bacterium isolate UBA11537 contig_9666, whole genome shotgun sequence (2704 bp)
Overview 1 RT 1: 376-2483 bp Neighborhood of RT #1 [376, 2494] Cas2_I_II_III RVT-CRISPR cas1_HMARI Feature: gene Location: 376-564 bp Feature: domain Description: Cas2_I_II_III Location: 382-538 bp Feature: domain Description: Cas2_I_II_III Location: 3 82-53 8 bp Feature: gene Location: 578-2494 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 794-1370 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 794-13 70 bp Feature: domain Description: cas1_HMARI Location: 1505-2483 bp Feature: domain Description: cas1_HMARI Location: 1505-2483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, cas1_HMARI (TIGR03641)