myRT

myRT report for GCA_003520455.1_ASM352045v1

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Seq: DOUV01000659.1 TPA_asm: Chloroflexi bacterium isolate UBA11198 contig_4234, whole genome shotgun sequence (10206 bp)
Overview 1 RT 1: 1-1660 bp Neighborhood of RT #1 [1, 1698] RVT-CRISPR RNase_HI_like Cas1_I-II-III Feature: gene Location: 1-153 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7-115 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7-1 1 5 bp Feature: gene Location: 260-688 bp Feature: domain Description: RNase_HI_like Location: 278-662 bp Feature: domain Description: RNase_HI_like Location: 278-662 bp Feature: gene Location: 694-1698 bp Feature: domain Description: Cas1_I-II-III Location: 703-1660 bp Feature: domain Description: Cas1 _I-II-III Location: 703-1 660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, RNase_HI_like (cd09279), Cas1_I-II-III (cl00656)

Seq: DOUV01000212.1 TPA_asm: Chloroflexi bacterium isolate UBA11198 contig_4692, whole genome shotgun sequence (7505 bp)
Overview 1 RT 1: 707-6115 bp Neighborhood of RT #1 [707, 6115] RVT_N RVT-GII RVT-GII Intron_maturas2 HNHc RVT-GII GIIM HNHc Feature: gene Location: 707-1564 bp Feature: domain Description: RVT_N Location: 755-1001 bp Feature: domain Description: RVT_N Location: 755-1001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1049-1547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1049-1547 bp Feature: gene Location: 2053-3873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2314-3112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 314-3112 bp Feature: domain Description: Intron_maturas2 Location: 3232-3448 bp Feature: domain Description: Intron_maturas2 Location: 32 32 -3448 bp Feature: domain Description: HNHc Note: nucleases Location: 3643-3799 bp Feature: domain Description: HNHc Note: nucleases Location: 3643-3799 bp Feature: gene Location: 3951-4757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3957-4095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3957-4095 bp Feature: domain Description: GIIM Note: maturase Location: 4167-4401 bp Feature: domain Description: GIIM Note: maturase Location: 4167-4401 bp Feature: domain Description: HNHc Note: nucleases Location: 4563-4752 bp Feature: domain Description: HNHc Note: nucleases Location: 4563-4752 bp Feature: gene Location: 4811-5623 bp Feature: gene Location: 5732-6115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), GIIM (pfam08388)

Seq: DOUV01001017.1 TPA_asm: Chloroflexi bacterium isolate UBA11198 contig_8310, whole genome shotgun sequence (3506 bp)
Overview 1 RT 1: 508-3499 bp Neighborhood of RT #1 [508, 3504] HTH_33 DDE_3 HsdM RVT-GII Feature: gene Location: 508-1323 bp Feature: domain Description: HTH_33 Location: 565-724 bp Feature: domain Description: HTH_3 3 Location: 565-724 bp Feature: domain Description: DDE_3 Location: 775-1207 bp Feature: domain Description: DDE_3 Location: 775-1207 bp Feature: gene Location: 1395-2069 bp Feature: domain Description: HsdM Location: 1731-2052 bp Feature: domain Description: HsdM Location: 173 1-2052 bp Feature: gene Location: 2683-3504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2965-3499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2965-3 499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_33 (pfam13592), DDE_3 (pfam13358), HsdM (COG0286), RVT-GII