myRT

myRT report for GCA_003520905.1_ASM352090v1

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Seq: DOTX01000058.1 TPA_asm: Pseudomonas sp. isolate UBA10808 contig_538, whole genome shotgun sequence (22416 bp)
Overview 1 RT 1: 4673-10706 bp Neighborhood of RT #1 [4673, 10717] dut PRK05579 RVT_N RVT-GII GIIM HNHc PRK00024 RpmB Feature: gene Location: 4673-5128 bp Feature: domain Description: dut Location: 4679-5123 bp Feature: domain Description: dut Location: 4679-51 23 bp Feature: gene Location: 5131-6339 bp Feature: domain Description: PRK05579 Location: 5137-6331 bp Feature: domain Description: PRK05579 Location: 51 37-6331 bp Feature: gene Location: 6547-8280 bp Feature: RT Description: RVT_N Location: 6607-6850 bp Feature: RT Description: RVT_N Location: 6607-6850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6898-7549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6898-7549 bp Feature: domain Description: GIIM Note: maturase Location: 7627-7855 bp Feature: domain Description: GIIM Note: maturase Location: 7627-7855 bp Feature: domain Description: HNHc Note: nucleases Location: 8083-8239 bp Feature: domain Description: HNHc Note: nucleases Location: 8083-8239 bp Feature: gene Location: 9418-10092 bp Feature: domain Description: PRK00024 Location: 9421-10090 bp Feature: domain Description: PRK00024 Location: 9421 -1 0090 bp Feature: gene Location: 10481-10717 bp Feature: domain Description: RpmB Location: 10484-10706 bp Feature: domain Description: RpmB Location: 1 0484-1 0706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpmB (COG0227), dut (TIGR00576), PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK00024 (DNA repair protein RadC)