myRT

myRT report for GCA_003521015.1_ASM352101v1

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Seq: DOTR01000014.1 TPA_asm: Halomonas campaniensis isolate UBA11284 contig_2069, whole genome shotgun sequence (27704 bp)
Overview 1 RT 1: 1-2566 bp Neighborhood of RT #1 [1, 2595] RVT-GII GIIM YhhI PRK10276 Feature: gene Location: 1-180 bp Feature: gene Location: 348-575 bp Feature: gene Location: 708-1958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912-1569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 2-1 569 bp Feature: domain Description: GIIM Note: maturase Location: 1659-1869 bp Feature: domain Description: GIIM Note: maturase Location: 1 659-1 869 bp Feature: gene Location: 1969-2241 bp Feature: domain Description: YhhI Location: 2035-2170 bp Feature: domain Description: YhhI Location: 2035-21 70 bp Feature: gene Location: 2248-2595 bp Feature: domain Description: PRK10276 Location: 2305-2566 bp Feature: domain Description: PRK1 0276 Location: 2305-2566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, GIIM (pfam08388)

Seq: DOTR01000007.1 TPA_asm: Halomonas campaniensis isolate UBA11284 contig_274, whole genome shotgun sequence (85473 bp)
Overview 1 RT 1: 32923-39205 bp Neighborhood of RT #1 [32923, 39222] DUF4065 RVT-GII GIIM FhuE AraC Feature: gene Location: 32923-33501 bp Feature: domain Description: DUF4065 Location: 33025-33358 bp Feature: domain Description: DUF4065 Location: 3302 5-33358 bp Feature: gene Location: 33573-33899 bp Feature: gene Location: 34596-35945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34887-35505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34887-35505 bp Feature: domain Description: GIIM Note: maturase Location: 35553-35766 bp Feature: domain Description: GIIM Note: maturase Location: 35553-35766 bp Feature: gene Location: 35997-38159 bp Feature: domain Description: FhuE Location: 36060-38136 bp Feature: domain Description: FhuE Location: 36060-38136 bp Feature: gene Location: 38287-39222 bp Feature: domain Description: AraC Location: 38887-39205 bp Feature: domain Description: AraC Location: 38887-392 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4065 (pfam13274), RVT-GII, GIIM (pfam08388), FhuE (COG4773), AraC (COG2207)

Seq: DOTR01000100.1 TPA_asm: Halomonas campaniensis isolate UBA11284 contig_614, whole genome shotgun sequence (83442 bp)
Overview 1 RT 1: 55232-62001 bp Neighborhood of RT #1 [55232, 62003] groEL RVT_N RVT-GII GIIM HNH TrmJ YuiF Feature: gene Location: 55232-56884 bp Feature: domain Description: groEL Location: 55238-56858 bp Feature: domain Description: groEL Location: 5523 8-56858 bp Feature: gene Location: 57404-57559 bp Feature: gene Location: 57863-59608 bp Feature: RT Description: RVT_N Location: 57971-58208 bp Feature: RT Description: RVT_N Location: 57971-58208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58259-58904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58259-58904 bp Feature: domain Description: GIIM Note: maturase Location: 58958-59189 bp Feature: domain Description: GIIM Note: maturase Location: 58958-59189 bp Feature: domain Description: HNH Note: nucleases Location: 59429-59567 bp Feature: domain Description: HNH Note: nucleases Location: 59429-59567 bp Feature: gene Location: 59847-60581 bp Feature: domain Description: TrmJ Location: 59850-60573 bp Feature: domain Description: TrmJ Location: 59850-60573 bp Feature: gene Location: 60657-62003 bp Feature: domain Description: YuiF Location: 60660-62001 bp Feature: domain Description: YuiF Location: 60660-62001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), TrmJ (COG0565), YuiF (COG2056)

Seq: DOTR01000032.1 TPA_asm: Halomonas campaniensis isolate UBA11284 contig_624, whole genome shotgun sequence (257248 bp)
Overview 1 RT 1: 233191-235830 bp Neighborhood of RT #1 [233191, 235928] InsE RVT-GII RVT-GII PRK09692 Feature: gene Location: 233191-233400 bp Feature: domain Description: InsE Location: 233212-233392 bp Feature: domain Description: InsE Location: 233212-233392 bp Feature: gene Location: 233421-233783 bp Feature: gene Location: 233896-234336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234169-234280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234 169-234 280 bp Feature: gene Location: 234333-235013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234366-234900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234 366-234 900 bp Feature: gene Location: 235045-235227 bp Feature: gene Location: 235533-235928 bp Feature: domain Description: PRK09692 Location: 235539-235830 bp Feature: domain Description: PRK09692 Location: 235539-235830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, PRK09692 (Integrase; provisional)