myRT

myRT report for GCA_003524825.1_ASM352482v1

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Seq: DQGI01000372.1 TPA_asm: Clostridiales bacterium isolate UBA8185 contig_14757, whole genome shotgun sequence (3831 bp)
Overview 1 RT 1: 410-3790 bp Neighborhood of RT #1 [410, 3828] group_II_RT_mat RVT-GII GIIM RVT-GII Feature: gene Location: 410-649 bp Feature: gene Location: 951-1460 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1125-1368 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 1 25-1 368 bp Feature: gene Location: 1701-3119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2076-2733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2076-2733 bp Feature: domain Description: GIIM Note: maturase Location: 2811-3039 bp Feature: domain Description: GIIM Note: maturase Location: 281 1 -3039 bp Feature: gene Location: 3625-3828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3628-3790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3628-3790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: DQGI01000061.1 TPA_asm: Clostridiales bacterium isolate UBA8185 contig_15791, whole genome shotgun sequence (10803 bp)
Overview 1 RT 1: 260-7826 bp Neighborhood of RT #1 [260, 7826] DUF4315 KOG4768 RVT-GII GIIM RVT-GII Lysozyme_like NLPC_P60 Feature: gene Location: 260-472 bp Feature: domain Description: DUF4315 Location: 272-437 bp Feature: domain Description: DUF4315 Location: 2 72 -437 bp Feature: gene Location: 720-1502 bp Feature: domain Description: KOG4768 Location: 729-1497 bp Feature: domain Description: KOG4768 Location: 72 9-1497 bp Feature: gene Location: 1663-2640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1669-2257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1669-2 2 57 bp Feature: domain Description: GIIM Note: maturase Location: 2338-2554 bp Feature: domain Description: GIIM Note: maturase Location: 2 338-2 554 bp Feature: gene Location: 3512-4471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3779-4442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3779-4442 bp Feature: gene Location: 5095-6102 bp Feature: domain Description: Lysozyme_like Location: 5248-5707 bp Feature: domain Description: Lysozyme_like Location: 52 48-5707 bp Feature: domain Description: NLPC_P60 Location: 5782-6043 bp Feature: domain Description: NLPC_P60 Location: 5782 -6043 bp Feature: gene Location: 6099-7826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4315 (pfam14193), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-GII, GIIM (pfam08388), Lysozyme_like (pfam13702), NLPC_P60 (pfam00877)

Seq: DQGI01000394.1 TPA_asm: Clostridiales bacterium isolate UBA8185 contig_1952, whole genome shotgun sequence (8971 bp)
Overview 1 RT 1: 139-6282 bp Neighborhood of RT #1 [139, 6282] RVT-UG8 RVT-UG3 Feature: gene Location: 139-1137 bp Feature: gene Location: 1310-3361 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1862-2300 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1862-23 00 bp Feature: gene Location: 3531-4976 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3876-4371 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3 876-43 71 bp Feature: gene Location: 5299-5856 bp Feature: gene Location: 6043-6282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3

Seq: DQGI01000245.1 TPA_asm: Clostridiales bacterium isolate UBA8185 contig_24192, whole genome shotgun sequence (4509 bp)
Overview 1 RT 1: 1378-4507 bp Neighborhood of RT #1 [1378, 4507] TIGR03986 RVT-GII GIIM Feature: gene Location: 1378-2088 bp Feature: domain Description: TIGR03986 Location: 1417-1918 bp Feature: domain Description: TIGR03986 Location: 14 17-1918 bp Feature: gene Location: 2302-2706 bp Feature: gene Location: 2947-3510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2950-3160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2950-3160 bp Feature: domain Description: GIIM Note: maturase Location: 3229-3445 bp Feature: domain Description: GIIM Note: maturase Location: 3229-34 4 5 bp Feature: gene Location: 3980-4507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR03986 (CRISPR-associated protein), RVT-GII, GIIM (pfam08388)

Seq: DQGI01000365.1 TPA_asm: Clostridiales bacterium isolate UBA8185 contig_33155, whole genome shotgun sequence (3485 bp)
Overview 1 RT 1: 2066-3384 bp Neighborhood of RT #1 [2066, 3482] RVT-GII GIIM Feature: gene Location: 2066-2209 bp Feature: gene Location: 2231-2767 bp Feature: gene Location: 2865-3482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2868-3099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2868-3099 bp Feature: domain Description: GIIM Note: maturase Location: 3180-3384 bp Feature: domain Description: GIIM Note: maturase Location: 3180-3384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: DQGI01000241.1 TPA_asm: Clostridiales bacterium isolate UBA8185 contig_5310, whole genome shotgun sequence (8866 bp)
Overview 1 RT 1: 4252-8863 bp Neighborhood of RT #1 [4252, 8863] INT_RitC_C_like RVT-GII Feature: gene Location: 4252-4527 bp Feature: gene Location: 4713-4928 bp Feature: domain Description: INT_RitC_C_like Location: 4716-4839 bp Feature: domain Description: INT_RitC_C_like Location: 4716 -4839 bp Feature: gene Location: 5173-6030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5527-5908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5527-5908 bp Feature: gene Location: 7679-8863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitC_C_like (cd01182), RVT-GII