myRT

myRT report for GCA_003525925.1_ASM352592v1

Download annotations/find similar RTs

Seq: DQHX01000308.1 TPA_asm: Chromatiaceae bacterium isolate UBA10422 contig_1030, whole genome shotgun sequence (2544 bp)
Overview 1 RT 1: 35-2071 bp Neighborhood of RT #1 [35, 2541] YdiL RVT-GII Feature: gene Location: 35-880 bp Feature: domain Description: YdiL Location: 86-719 bp Feature: domain Description: YdiL Location: 86-71 9 bp Feature: gene Location: 962-1813 bp Feature: gene Location: 1903-2541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1918-2071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 8-2071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdiL (COG1266), RVT-GII

Seq: DQHX01000262.1 TPA_asm: Chromatiaceae bacterium isolate UBA10422 contig_135, whole genome shotgun sequence (18345 bp)
Overview 1 RT 1: 1-1353 bp Neighborhood of RT #1 [1, 1361] RVT-GII DUF4258 Feature: gene Location: 1-597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25-217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5-2 17 bp Feature: gene Location: 727-951 bp Feature: gene Location: 1089-1361 bp Feature: domain Description: DUF4258 Location: 1143-1353 bp Feature: domain Description: DUF42 58 Location: 1143-1353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF4258 (pfam14076)

Seq: DQHX01000303.1 TPA_asm: Chromatiaceae bacterium isolate UBA10422 contig_1382, whole genome shotgun sequence (4416 bp)
Overview 1 RT 1: 408-4310 bp Neighborhood of RT #1 [408, 4414] CRISPR_Cas2 CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III RAYT Feature: gene Location: 408-686 bp Feature: domain Description: CRISPR_Cas2 Location: 417-630 bp Feature: domain Description: CRISPR_Cas2 Location: 417-63 0 bp Feature: gene Location: 722-3721 bp Feature: domain Description: CRISPR_Cas6 Location: 1202-1583 bp Feature: domain Description: CRISPR_Cas6 Location: 1202-1583 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1901-2501 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1901-2501 bp Feature: domain Description: Cas1_I-II-III Location: 2762-3680 bp Feature: domain Description: Cas1_I-II-III Location: 2762-3 680 bp Feature: gene Location: 3941-4414 bp Feature: domain Description: RAYT Location: 3974-4310 bp Feature: domain Description: RAYT Location: 3 974-43 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas2 (pfam09827), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), RAYT (COG1943)

Seq: DQHX01000369.1 TPA_asm: Chromatiaceae bacterium isolate UBA10422 contig_1499, whole genome shotgun sequence (6845 bp)
Overview 1 RT 1: 1275-4699 bp Neighborhood of RT #1 [1275, 5118] pfam03781 RVT-DGRs Avd_like HTH_17 Feature: gene Location: 1275-1778 bp Feature: gene Location: 1722-2837 bp Feature: domain Description: pfam03781 Location: 2163-2814 bp Feature: domain Description: pfam03781 Location: 2163-2814 bp Feature: gene Location: 2956-3948 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3166-3817 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3166-3817 bp Feature: gene Location: 4238-4459 bp Feature: domain Description: Avd_like Location: 4241-4442 bp Feature: domain Description: Avd_like Location: 4 24 1-4 4 4 2 bp Feature: gene Location: 4567-5118 bp Feature: domain Description: HTH_17 Location: 4576-4699 bp Feature: domain Description: HTH_17 Location: 4 576-4 699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), RVT-DGRs, Avd_like (cd16376), HTH_17 (pfam12728)

Seq: DQHX01000091.1 TPA_asm: Chromatiaceae bacterium isolate UBA10422 contig_1939, whole genome shotgun sequence (3010 bp)
Overview 1 RT 1: 250-2989 bp Neighborhood of RT #1 [250, 3009] RVT-DGRs Avd_like pfam03781 Feature: gene Location: 250-1347 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 475-1120 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 475 -1120 bp Feature: gene Location: 1334-1693 bp Feature: domain Description: Avd_like Location: 1358-1667 bp Feature: domain Description: Avd_like Location: 135 8-1667 bp Feature: gene Location: 2191-3009 bp Feature: domain Description: pfam03781 Location: 2347-2989 bp Feature: domain Description: pfam03781 Location: 2347-2989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)

Seq: DQHX01000103.1 TPA_asm: Chromatiaceae bacterium isolate UBA10422 contig_271, whole genome shotgun sequence (10051 bp)
Overview 1 RT 1: 705-6710 bp Neighborhood of RT #1 [705, 6805] RVT-GII RVT-GII RND_mfp AcrB Feature: gene Location: 705-1001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813-906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813-906 bp Feature: gene Location: 982-1872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012-1492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012-1492 bp Feature: gene Location: 2463-3587 bp Feature: domain Description: RND_mfp Location: 2574-3546 bp Feature: domain Description: RND_mfp Location: 2574-3546 bp Feature: gene Location: 3587-6805 bp Feature: domain Description: AcrB Location: 3590-6710 bp Feature: domain Description: AcrB Location: 3590-6 710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RND_mfp (TIGR01730), AcrB (COG0841)

Seq: DQHX01000058.1 TPA_asm: Chromatiaceae bacterium isolate UBA10422 contig_39, whole genome shotgun sequence (20749 bp)
Overview 1 RT 1: 17312-20724 bp Neighborhood of RT #1 [17312, 20747] MltB_2 PG_binding_1 PG_binding_1 RVT-DGRs Avd_like Feature: gene Location: 17312-18979 bp Feature: domain Description: MltB_2 Location: 17612-18497 bp Feature: domain Description: MltB_2 Location: 17 612-18497 bp Feature: domain Description: PG_binding_1 Location: 18554-18707 bp Feature: domain Description: PG_binding_1 Location: 18554-187 07 bp Feature: domain Description: PG_binding_1 Location: 18797-18950 bp Feature: domain Description: PG_binding_1 Location: 187 97 -18950 bp Feature: gene Location: 19085-19306 bp Feature: gene Location: 19465-20478 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19672-20272 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1967 2-2027 2 bp Feature: gene Location: 20475-20747 bp Feature: domain Description: Avd_like Location: 20478-20724 bp Feature: domain Description: Avd_like Location: 2047 8-207 24 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MltB_2 (TIGR02283), PG_binding_1 (pfam01471), RVT-DGRs, Avd_like (cd16376)

Seq: DQHX01000150.1 TPA_asm: Chromatiaceae bacterium isolate UBA10422 contig_439, whole genome shotgun sequence (22911 bp)
Overview 1 RT 1: 19002-22908 bp Neighborhood of RT #1 [19002, 22908] RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 19002-19238 bp Feature: gene Location: 18714-19547 bp Feature: gene Location: 19713-20351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19722-20064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19722-20064 bp Feature: domain Description: GIIM Note: maturase Location: 20112-20286 bp Feature: domain Description: GIIM Note: maturase Location: 20112-2028 6 bp Feature: gene Location: 20632-20868 bp Feature: gene Location: 21216-22529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21447-22062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21447-22062 bp Feature: domain Description: GIIM Note: maturase Location: 22110-22332 bp Feature: domain Description: GIIM Note: maturase Location: 22110-22332 bp Feature: gene Location: 22765-22908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: DQHX01000248.1 TPA_asm: Chromatiaceae bacterium isolate UBA10422 contig_61, whole genome shotgun sequence (78582 bp)
Overview 1 RT 1: 28849-33423 bp Neighborhood of RT #1 [28849, 33434] HicB HicB RVT-GII RVT-GII rpoZ PRK11092 Feature: gene Location: 28849-29040 bp Feature: domain Description: HicB Location: 28867-28993 bp Feature: domain Description: HicB Location: 28867-289 9 3 bp Feature: gene Location: 29526-29738 bp Feature: domain Description: HicB Location: 29529-29730 bp Feature: domain Description: HicB Location: 29 529 -29 730 bp Feature: gene Location: 29877-30173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29985-30078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29 9 85-30078 bp Feature: gene Location: 30145-30375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30169-30373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30169 -30373 bp Feature: gene Location: 30671-31027 bp Feature: domain Description: rpoZ Location: 30722-30920 bp Feature: domain Description: rpoZ Location: 30722-309 20 bp Feature: gene Location: 31149-33434 bp Feature: domain Description: PRK11092 Location: 31305-33423 bp Feature: domain Description: PRK1109 2 Location: 31305-33423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicB (pfam05534), RVT-GII, rpoZ (TIGR00690), PRK11092 (bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase)

Seq: DQHX01000012.1 TPA_asm: Chromatiaceae bacterium isolate UBA10422 contig_929, whole genome shotgun sequence (11800 bp)
Overview 1 RT 1: 2052-7477 bp Neighborhood of RT #1 [2052, 7650] YfmG RVT-DGRs HRDC YfmG Feature: gene Location: 2052-2975 bp Feature: domain Description: YfmG Location: 2172-2841 bp Feature: domain Description: YfmG Location: 2172-2841 bp Feature: gene Location: 2849-3334 bp Feature: gene Location: 3363-4367 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3576-4158 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3576-4158 bp Feature: gene Location: 4354-4821 bp Feature: domain Description: HRDC Location: 4600-4792 bp Feature: domain Description: HRDC Location: 4600-4792 bp Feature: gene Location: 4864-7650 bp Feature: domain Description: YfmG Location: 6814-7477 bp Feature: domain Description: YfmG Location: 6814-7477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, HRDC (smart00341)