myRT

myRT report for GCA_003527145.1_ASM352714v1

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Seq: DPSW01000373.1 TPA_asm: Clostridiaceae bacterium isolate UBA7994 contig_11346, whole genome shotgun sequence (3481 bp)
Overview 1 RT 1: 2-2561 bp Neighborhood of RT #1 [2, 2561] RVT-Retrons Feature: gene Location: 2-805 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 155-716 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 55-71 6 bp Feature: gene Location: 975-1901 bp Feature: gene Location: 2238-2561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: DPSW01000110.1 TPA_asm: Clostridiaceae bacterium isolate UBA7994 contig_17695, whole genome shotgun sequence (14183 bp)
Overview 1 RT 1: 9070-13534 bp Neighborhood of RT #1 [9070, 13534] uvrC RVT-GII Feature: gene Location: 9070-10929 bp Feature: domain Description: uvrC Location: 9079-10924 bp Feature: domain Description: uvrC Location: 9079-1092 4 bp Feature: gene Location: 11005-11733 bp Feature: gene Location: 12012-12875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12138-12771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 138-12 771 bp Feature: gene Location: 12862-13212 bp Feature: gene Location: 13160-13534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, uvrC (TIGR00194)

Seq: DPSW01000432.1 TPA_asm: Clostridiaceae bacterium isolate UBA7994 contig_29000, whole genome shotgun sequence (5720 bp)
Overview 1 RT 1: 778-4555 bp Neighborhood of RT #1 [778, 4662] CcmA RVT-GII KOG4768 Phage_int_SAM_5 TM1586_NiRdase TM1586_NiRdase Feature: gene Location: 778-1713 bp Feature: domain Description: CcmA Location: 802-1693 bp Feature: domain Description: CcmA Location: 802-1693 bp Feature: gene Location: 1989-2147 bp Feature: gene Location: 2215-2775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2260-2482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2260-2482 bp Feature: domain Description: KOG4768 Location: 2530-2689 bp Feature: domain Description: KOG4768 Location: 253 0-2689 bp Feature: gene Location: 3205-3501 bp Feature: domain Description: Phage_int_SAM_5 Location: 3289-3445 bp Feature: domain Description: Phage_int_SAM_5 Location: 3 289-3 445 bp Feature: gene Location: 3778-4662 bp Feature: domain Description: TM1586_NiRdase Location: 3793-4303 bp Feature: domain Description: TM1586_NiRdase Location: 3 793 -43 03 bp Feature: domain Description: TM1586_NiRdase Location: 4408-4555 bp Feature: domain Description: TM1586_NiRdase Location: 4408-4555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Phage_int_SAM_5 (pfam13102), TM1586_NiRdase (pfam14512), CcmA (COG4133)