myRT

myRT report for GCA_003529405.1_ASM352940v1

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Seq: DOJI01000132.1 TPA_asm: Afipia sp. isolate UBA10393 contig_132, whole genome shotgun sequence (49723 bp)
Overview 1 RT 1: 32382-36336 bp Neighborhood of RT #1 [32382, 36341] RVT-GII GIIM DDE_5 Feature: gene Location: 32382-33068 bp Feature: gene Location: 33238-33507 bp Feature: gene Location: 34205-35572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34556-35195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34556-351 95 bp Feature: domain Description: GIIM Note: maturase Location: 35270-35489 bp Feature: domain Description: GIIM Note: maturase Location: 35270-35489 bp Feature: gene Location: 35612-35755 bp Feature: gene Location: 36006-36341 bp Feature: domain Description: DDE_5 Location: 36048-36336 bp Feature: domain Description: DDE_5 Location: 36048-36336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_5 (pfam13546)

Seq: DOJI01000053.1 TPA_asm: Afipia sp. isolate UBA10393 contig_2697, whole genome shotgun sequence (25592 bp)
Overview 1 RT 1: 1179-11046 bp Neighborhood of RT #1 [1179, 11081] YbjD YbjD DEXQc_UvrD DEXQc_UvrD recB RVT-Retrons MPP_Mre11_N YhaN Feature: gene Location: 1179-2813 bp Feature: domain Description: YbjD Location: 1182-1323 bp Feature: domain Description: YbjD Location: 1182 -132 3 bp Feature: domain Description: YbjD Location: 1866-2526 bp Feature: domain Description: YbjD Location: 1866-2 52 6 bp Feature: gene Location: 2810-3958 bp Feature: domain Description: DEXQc_UvrD Location: 2819-3002 bp Feature: domain Description: DEXQc_UvrD Location: 2 819-3002 bp Feature: domain Description: DEXQc_UvrD Location: 3191-3392 bp Feature: domain Description: DEXQc_UvrD Location: 3191-3392 bp Feature: domain Description: recB Location: 3848-3899 bp Feature: domain Description: recB Location: 3848-3899 bp Feature: gene Location: 4060-5838 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4192-4813 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4192 -4813 bp Feature: gene Location: 6306-7574 bp Feature: domain Description: MPP_Mre11_N Location: 6318-6972 bp Feature: domain Description: MPP_Mre11_N Location: 6318-6972 bp Feature: gene Location: 7578-11081 bp Feature: domain Description: YhaN Location: 7581-11046 bp Feature: domain Description: YhaN Location: 7581-11046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjD (COG3593), DEXQc_UvrD (cd17932), recB (TIGR00609), RVT-Retrons, MPP_Mre11_N (cd00840), YhaN (COG4717)