myRT

myRT report for GCA_003529415.1_ASM352941v1

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Seq: DOJH01000056.1 TPA_asm: Halomonas campaniensis isolate UBA10741 contig_2823, whole genome shotgun sequence (33056 bp)
Overview 1 RT 1: 6357-10947 bp Neighborhood of RT #1 [6357, 10947] FhuE FhuE RVT-GII GIIM Feature: gene Location: 6357-7313 bp Feature: domain Description: FhuE Location: 6417-7296 bp Feature: domain Description: FhuE Location: 641 7-7296 bp Feature: gene Location: 7381-8523 bp Feature: domain Description: FhuE Location: 7405-8500 bp Feature: domain Description: FhuE Location: 7405-8500 bp Feature: gene Location: 8575-9924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8866-9484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8866-9484 bp Feature: domain Description: GIIM Note: maturase Location: 9532-9745 bp Feature: domain Description: GIIM Note: maturase Location: 9532-9745 bp Feature: gene Location: 9676-10395 bp Feature: gene Location: 10621-10947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FhuE (COG4773), RVT-GII, GIIM (pfam08388)

Seq: DOJH01000037.1 TPA_asm: Halomonas campaniensis isolate UBA10741 contig_2924, whole genome shotgun sequence (46572 bp)
Overview 1 RT 1: 3880-6604 bp Neighborhood of RT #1 [3880, 6612] PRK09692 RVT-GII RVT-GII InsE Feature: gene Location: 3880-4275 bp Feature: domain Description: PRK09692 Location: 3886-4177 bp Feature: domain Description: PRK09692 Location: 3886-4177 bp Feature: gene Location: 4521-4718 bp Feature: gene Location: 4790-5470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4820-5357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482 0-5357 bp Feature: gene Location: 5467-5907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5740-5851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5740-5851 bp Feature: gene Location: 6020-6382 bp Feature: gene Location: 6403-6612 bp Feature: domain Description: InsE Location: 6424-6604 bp Feature: domain Description: InsE Location: 642 4-6604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-GII, InsE (COG2963)

Seq: DOJH01000067.1 TPA_asm: Halomonas campaniensis isolate UBA10741 contig_2942, whole genome shotgun sequence (31271 bp)
Overview 1 RT 1: 13463-20223 bp Neighborhood of RT #1 [13463, 20225] groEL RVT_N RVT-GII GIIM HNH TrmJ YuiF Feature: gene Location: 13463-15106 bp Feature: domain Description: groEL Location: 13469-15089 bp Feature: domain Description: groEL Location: 13 469-15089 bp Feature: gene Location: 15626-15781 bp Feature: gene Location: 16085-17830 bp Feature: domain Description: RVT_N Location: 16193-16430 bp Feature: domain Description: RVT_N Location: 16193 -1643 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16481-17126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16481-17126 bp Feature: domain Description: GIIM Note: maturase Location: 17180-17411 bp Feature: domain Description: GIIM Note: maturase Location: 17180-17411 bp Feature: domain Description: HNH Note: nucleases Location: 17651-17789 bp Feature: domain Description: HNH Note: nucleases Location: 17651-17789 bp Feature: gene Location: 18069-18803 bp Feature: domain Description: TrmJ Location: 18072-18795 bp Feature: domain Description: TrmJ Location: 18072-18795 bp Feature: gene Location: 18879-20225 bp Feature: domain Description: YuiF Location: 18882-20223 bp Feature: domain Description: YuiF Location: 18882-20223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), TrmJ (COG0565), YuiF (COG2056)

Seq: DOJH01000050.1 TPA_asm: Halomonas campaniensis isolate UBA10741 contig_6293, whole genome shotgun sequence (20310 bp)
Overview 1 RT 1: 15156-18908 bp Neighborhood of RT #1 [15156, 19483] COG3791 RVT-AbiP2 INT_RitA_C_like TIR_2 Feature: gene Location: 15156-15299 bp Feature: gene Location: 15416-15823 bp Feature: domain Description: COG3791 Location: 15419-15809 bp Feature: domain Description: COG3791 Location: 154 19-15809 bp Feature: gene Location: 15994-17490 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 16411-16861 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 164 11-16861 bp Feature: gene Location: 17635-18012 bp Feature: domain Description: INT_RitA_C_like Location: 17641-17998 bp Feature: domain Description: INT_RitA_C_like Location: 1764 1-17998 bp Feature: gene Location: 18527-19483 bp Feature: domain Description: TIR_2 Location: 18545-18908 bp Feature: domain Description: TIR_2 Location: 1854 5-18908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3791 (Uncharacterized conserved protein ), RVT-AbiP2, INT_RitA_C_like (cd01188), TIR_2 (pfam13676)