myRT

myRT report for GCA_003529865.1_ASM352986v1

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Seq: DPUN01000034.1 TPA_asm: Agrobacterium sp. isolate UBA11724 contig_112, whole genome shotgun sequence (79672 bp)
Overview 1 RT 1: 37219-42201 bp Neighborhood of RT #1 [37219, 42224] RVT_N RVT-GII GIIM DUF3846 YncB Feature: gene Location: 37219-37407 bp Feature: gene Location: 37879-38202 bp Feature: gene Location: 38975-40474 bp Feature: RT Description: RVT_N Location: 39080-39320 bp Feature: RT Description: RVT_N Location: 39080-39320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39368-40010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39368-4001 0 bp Feature: domain Description: GIIM Note: maturase Location: 40061-40295 bp Feature: domain Description: GIIM Note: maturase Location: 40061 -40295 bp Feature: gene Location: 40780-41214 bp Feature: domain Description: DUF3846 Location: 40804-41050 bp Feature: domain Description: DUF3846 Location: 40804-41 050 bp Feature: gene Location: 41634-42224 bp Feature: domain Description: YncB Location: 41877-42201 bp Feature: domain Description: YncB Location: 41 877-42201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3846 (pfam12957), YncB (COG1525)

Seq: DPUN01000017.1 TPA_asm: Agrobacterium sp. isolate UBA11724 contig_52, whole genome shotgun sequence (145126 bp)
Overview 1 RT 1: 97771-102207 bp Neighborhood of RT #1 [97771, 102212] PHA00653 PHA00652 RVT-DGRs PRK05643 Feature: gene Location: 97771-98700 bp Feature: domain Description: PHA00653 Location: 97840-98695 bp Feature: domain Description: PHA00653 Location: 97840-98695 bp Feature: gene Location: 98745-99122 bp Feature: domain Description: PHA00652 Location: 98778-99117 bp Feature: domain Description: PHA00652 Location: 98778-99117 bp Feature: gene Location: 99119-100453 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 99656-100250 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 99656-1002 50 bp Feature: gene Location: 100721-101071 bp Feature: gene Location: 101079-102212 bp Feature: domain Description: PRK05643 Location: 101100-102207 bp Feature: domain Description: PRK05643 Location: 101100-102 2 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), PHA00653 (mtd;major tropism determinant), PHA00652 (hypothetical protein), RVT-DGRs