myRT

myRT report for GCA_003530475.1_ASM353047v1

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Seq: DPSP01000006.1 TPA_asm: Providencia sp. isolate UBA11267 contig_578, whole genome shotgun sequence (235200 bp)
Overview 1 RT 1: 100932-104970 bp Neighborhood of RT #1 [100932, 105152] ptaRNA1_toxin RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 100932-101186 bp Feature: gene Location: 101259-101486 bp Feature: domain Description: ptaRNA1_toxin Location: 101262-101469 bp Feature: domain Description: ptaRNA1 _toxin Location: 1 01 262-1 01 469 bp Feature: gene Location: 101898-102842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 102012-102603 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 0201 2-1 02603 bp Feature: gene Location: 102835-104475 bp Feature: domain Description: COG3950 Location: 103033-104332 bp Feature: domain Description: COG3950 Location: 1 03033-1 04332 bp Feature: gene Location: 104481-105152 bp Feature: domain Description: TIGR02646 Location: 104550-104970 bp Feature: domain Description: TIGR02646 Location: 1 04550-1 04970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ptaRNA1_toxin (pfam12703), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: DPSP01000028.1 TPA_asm: Providencia sp. isolate UBA11267 contig_758, whole genome shotgun sequence (377037 bp)
Overview 1 RT 1: 358707-363790 bp Neighborhood of RT #1 [358707, 363801] Inovirus_Gp2 RVT-UG17 SLATT_5 HTH_38 Tra8 Feature: gene Location: 358707-359378 bp Feature: domain Description: Inovirus_Gp2 Location: 358809-359370 bp Feature: domain Description: Inovirus_Gp2 Location: 358809-359370 bp Feature: gene Location: 359510-359638 bp Feature: gene Location: 359844-361175 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 360072-360675 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 360072 -360675 bp Feature: gene Location: 361180-361827 bp Feature: domain Description: SLATT_5 Location: 361186-361777 bp Feature: domain Description: SLATT_5 Location: 361186-361777 bp Feature: gene Location: 362650-363801 bp Feature: domain Description: HTH_38 Location: 362659-362773 bp Feature: domain Description: HTH_38 Location: 362 659-362 773 bp Feature: domain Description: Tra8 Location: 362809-363790 bp Feature: domain Description: Tra8 Location: 362 809-363790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), RVT-UG17, SLATT_5 (pfam18160), HTH_38 (pfam13936), Tra8 (COG2826)