myRT

myRT report for GCA_003532275.1_ASM353227v1

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Seq: DOET01000018.1 TPA_asm: Halomonas sp. isolate UBA10708 contig_1252, whole genome shotgun sequence (73055 bp)
Overview 1 RT 1: 11048-17793 bp Neighborhood of RT #1 [11048, 17810] YuiF TrmJ RVT_N RVT-GII GIIM HNH groEL Feature: gene Location: 11048-12394 bp Feature: domain Description: YuiF Location: 11051-12392 bp Feature: domain Description: YuiF Location: 1 1 051 -1 2392 bp Feature: gene Location: 12470-13204 bp Feature: domain Description: TrmJ Location: 12473-13196 bp Feature: domain Description: TrmJ Location: 1 2473-1 31 96 bp Feature: gene Location: 13443-15188 bp Feature: domain Description: RVT_N Location: 13551-13788 bp Feature: domain Description: RVT_N Location: 1 3551 -1 3788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13839-14484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3839-1 4484 bp Feature: domain Description: GIIM Note: maturase Location: 14538-14769 bp Feature: domain Description: GIIM Note: maturase Location: 1 4538-1 4769 bp Feature: domain Description: HNH Note: nucleases Location: 15009-15147 bp Feature: domain Description: HNH Note: nucleases Location: 1 5009-1 51 47 bp Feature: gene Location: 15492-15647 bp Feature: gene Location: 16167-17810 bp Feature: domain Description: groEL Location: 16173-17793 bp Feature: domain Description: groEL Location: 1 61 73-1 7793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YuiF (COG2056), TrmJ (COG0565), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), groEL (PRK12852)

Seq: DOET01000047.1 TPA_asm: Halomonas sp. isolate UBA10708 contig_388, whole genome shotgun sequence (319719 bp)
Overview 1 RT 1: 21094-23476 bp 2 RT 2: 313552-317304 bp Neighborhood of RT #1 [21094, 23484] RVT-GII RVT-GII InsE Neighborhood of RT #2 [313552, 317879] COG3791 RVT-AbiP2 INT_RitA_C_like TIR_2 Feature: gene Location: 21094-21246 bp Feature: gene Location: 21393-21590 bp Feature: gene Location: 21662-22342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21692-22229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1692 -2 2 2 2 9 bp Feature: gene Location: 22339-22779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22612-22723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 612 -2 2 72 3 bp Feature: gene Location: 22892-23254 bp Feature: gene Location: 23275-23484 bp Feature: domain Description: InsE Location: 23296-23476 bp Feature: domain Description: InsE Location: 2 32 96-2 3476 bp Feature: gene Location: 313552-313695 bp Feature: gene Location: 313812-314219 bp Feature: domain Description: COG3791 Location: 313815-314205 bp Feature: domain Description: COG3791 Location: 313815-3142 05 bp Feature: gene Location: 314390-315886 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 314807-315257 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 314807-3152 57 bp Feature: gene Location: 316031-316408 bp Feature: domain Description: INT_RitA_C_like Location: 316037-316394 bp Feature: domain Description: INT_RitA_C_like Location: 316037-316394 bp Feature: gene Location: 316923-317879 bp Feature: domain Description: TIR_2 Location: 316941-317304 bp Feature: domain Description: TIR_2 Location: 316941-317304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963), COG3791 (Uncharacterized conserved protein ), RVT-AbiP2, INT_RitA_C_like (cd01188), TIR_2 (pfam13676)