myRT

myRT report for GCA_003537795.1_ASM353779v1

Download annotations/find similar RTs

Seq: DPQP01000007.1 TPA_asm: Firmicutes bacterium isolate UBA11472 contig_10704, whole genome shotgun sequence (41423 bp)
Overview 1 RT 1: 30570-35757 bp Neighborhood of RT #1 [30570, 35777] T_den_put_tspse RVT-DGRs MutS_I IS285 Feature: gene Location: 30570-31652 bp Feature: gene Location: 32026-32886 bp Feature: domain Description: T_den_put_tspse Location: 32062-32851 bp Feature: domain Description: T_den_put_tspse Location: 32062-32851 bp Feature: gene Location: 33143-34207 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33329-34001 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33329-34001 bp Feature: gene Location: 34535-34915 bp Feature: domain Description: MutS_I Location: 34544-34733 bp Feature: domain Description: MutS_I Location: 34544-34733 bp Feature: gene Location: 35145-35777 bp Feature: domain Description: IS285 Location: 35151-35757 bp Feature: domain Description: IS285 Location: 351 51 -35757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T_den_put_tspse (TIGR01784), RVT-DGRs, MutS_I (pfam01624), IS285 (COG3328)

Seq: DPQP01000008.1 TPA_asm: Firmicutes bacterium isolate UBA11472 contig_11859, whole genome shotgun sequence (4292 bp)
Overview 1 RT 1: 3-4290 bp Neighborhood of RT #1 [3, 4290] PHA03067 FemAB RVT-DGRs Feature: gene Location: 3-665 bp Feature: domain Description: PHA03067 Location: 336-579 bp Feature: domain Description: PHA03067 Location: 336-579 bp Feature: gene Location: 704-1915 bp Feature: domain Description: FemAB Location: 722-1883 bp Feature: domain Description: FemAB Location: 72 2 -1883 bp Feature: gene Location: 1979-3091 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2171-2903 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 171-2 903 bp Feature: gene Location: 4111-4290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, PHA03067 (hypothetical protein; Provisional), FemAB (pfam02388)

Seq: DPQP01000004.1 TPA_asm: Firmicutes bacterium isolate UBA11472 contig_2149, whole genome shotgun sequence (291410 bp)
Overview 1 RT 1: 127273-133777 bp Neighborhood of RT #1 [127273, 133884] RVT-Retrons FRG HigB-like_toxin Feature: gene Location: 127273-128565 bp Feature: gene Location: 128878-130035 bp Feature: gene Location: 130238-131284 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 130466-131027 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 0466-13 1027 bp Feature: gene Location: 132034-133341 bp Feature: domain Description: FRG Location: 132358-132643 bp Feature: domain Description: FRG Location: 13 23 58-13 2643 bp Feature: gene Location: 133507-133884 bp Feature: domain Description: HigB-like_toxin Location: 133573-133777 bp Feature: domain Description: HigB-like_toxin Location: 13 3 573 -13 3 777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, FRG (smart00901), HigB-like_toxin (pfam05015)

Seq: DPQP01000005.1 TPA_asm: Firmicutes bacterium isolate UBA11472 contig_7680, whole genome shotgun sequence (74711 bp)
Overview 1 RT 1: 68967-74593 bp Neighborhood of RT #1 [68967, 74593] EpsO_like MutS_I RVT-DGRs Avd_like Feature: gene Location: 68967-70211 bp Feature: domain Description: EpsO_like Location: 69117-69657 bp Feature: domain Description: EpsO_like Location: 69117-69657 bp Feature: gene Location: 70333-70674 bp Feature: domain Description: MutS_I Location: 70348-70588 bp Feature: domain Description: MutS_I Location: 7034 8-70588 bp Feature: gene Location: 70696-71700 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 70909-71512 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 70909-71512 bp Feature: gene Location: 71685-72044 bp Feature: domain Description: Avd_like Location: 71715-72030 bp Feature: domain Description: Avd_like Location: 71715-72030 bp Feature: gene Location: 73421-74593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EpsO_like (cd06438), MutS_I (pfam01624), RVT-DGRs, Avd_like (cd16376)