myRT

myRT report for GCA_003539805.1_ASM353980v1

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Seq: DPOE01000046.1 TPA_asm: Afipia sp. isolate UBA9886 contig_3969, whole genome shotgun sequence (16506 bp)
Overview 1 RT 1: 1219-11086 bp Neighborhood of RT #1 [1219, 11121] YbjD YbjD DEXQc_UvrD DEXQc_UvrD recB RVT-Retrons MPP_Mre11_N YhaN Feature: gene Location: 1219-2853 bp Feature: domain Description: YbjD Location: 1222-1363 bp Feature: domain Description: YbjD Location: 1 222-1 363 bp Feature: domain Description: YbjD Location: 1906-2566 bp Feature: domain Description: YbjD Location: 1 906-2566 bp Feature: gene Location: 2850-3998 bp Feature: domain Description: DEXQc_UvrD Location: 2859-3042 bp Feature: domain Description: DEXQc_UvrD Location: 2859-3042 bp Feature: domain Description: DEXQc_UvrD Location: 3231-3432 bp Feature: domain Description: DEXQc_UvrD Location: 3231 -3432 bp Feature: domain Description: recB Location: 3888-3939 bp Feature: domain Description: recB Location: 3888-3939 bp Feature: gene Location: 4100-5878 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4232-4853 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4232-4853 bp Feature: gene Location: 6346-7614 bp Feature: domain Description: MPP_Mre11_N Location: 6358-7012 bp Feature: domain Description: MPP_Mre1 1 _N Location: 6358-701 2 bp Feature: gene Location: 7618-11121 bp Feature: domain Description: YhaN Location: 7621-11086 bp Feature: domain Description: YhaN Location: 7621 -1 1 086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjD (COG3593), DEXQc_UvrD (cd17932), recB (TIGR00609), RVT-Retrons, MPP_Mre11_N (cd00840), YhaN (COG4717)

Seq: DPOE01000032.1 TPA_asm: Afipia sp. isolate UBA9886 contig_546, whole genome shotgun sequence (100723 bp)
Overview 1 RT 1: 56420-62017 bp Neighborhood of RT #1 [56420, 62022] DDE_5 RVT-GII GIIM VirB10 Feature: gene Location: 56420-56755 bp Feature: domain Description: DDE_5 Location: 56462-56750 bp Feature: domain Description: DDE_5 Location: 56462 -56750 bp Feature: gene Location: 57006-57149 bp Feature: gene Location: 57189-58490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57474-58113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57474-58113 bp Feature: domain Description: GIIM Note: maturase Location: 58188-58407 bp Feature: domain Description: GIIM Note: maturase Location: 58188-58407 bp Feature: gene Location: 59693-60379 bp Feature: gene Location: 60826-62022 bp Feature: domain Description: VirB10 Location: 60892-62017 bp Feature: domain Description: VirB10 Location: 60892 -62 017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388), VirB10 (COG2948)