myRT

myRT report for GCA_003541095.1_ASM354109v1

Download annotations/find similar RTs

Seq: DPMV01000569.1 TPA_asm: Pseudoalteromonas sp. isolate UBA11876 contig_10792, whole genome shotgun sequence (5507 bp)
Overview 1 RT 1: 2132-5492 bp Neighborhood of RT #1 [2132, 5506] DUF2383 SLATT_5 RVT-UG17 srpA_like Feature: gene Location: 2132-2575 bp Feature: domain Description: DUF2383 Location: 2156-2483 bp Feature: domain Description: DUF2383 Location: 21 56-2483 bp Feature: gene Location: 3126-3746 bp Feature: domain Description: SLATT_5 Location: 3132-3669 bp Feature: domain Description: SLATT_5 Location: 31 32-3669 bp Feature: gene Location: 3749-5092 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3980-4586 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 3980-4586 bp Feature: gene Location: 5297-5506 bp Feature: domain Description: srpA_like Location: 5300-5492 bp Feature: domain Description: srpA_like Location: 5300-5492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2383 (pfam09537), SLATT_5 (pfam18160), RVT-UG17, srpA_like (cd08153)

Seq: DPMV01000219.1 TPA_asm: Pseudoalteromonas sp. isolate UBA11876 contig_19739, whole genome shotgun sequence (3107 bp)
Overview 1 RT 1: 52-1819 bp Neighborhood of RT #1 [52, 2817] RVT-Retrons Feature: gene Location: 52-612 bp Feature: gene Location: 964-2817 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1099-1819 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1099-1819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: DPMV01000039.1 TPA_asm: Pseudoalteromonas sp. isolate UBA11876 contig_33373, whole genome shotgun sequence (2673 bp)
Overview 1 RT 1: 465-2672 bp Neighborhood of RT #1 [465, 2672] RVT-GII GIIM Feature: gene Location: 465-1784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723-1341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723 -13 41 bp Feature: domain Description: GIIM Note: maturase Location: 1386-1611 bp Feature: domain Description: GIIM Note: maturase Location: 13 86-1611 bp Feature: gene Location: 2256-2672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: DPMV01000434.1 TPA_asm: Pseudoalteromonas sp. isolate UBA11876 contig_4323, whole genome shotgun sequence (37938 bp)
Overview 1 RT 1: 101-2906 bp Neighborhood of RT #1 [101, 2962] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 101-1624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374 -1106 bp Feature: domain Description: GIIM Note: maturase Location: 1178-1379 bp Feature: domain Description: GIIM Note: maturase Location: 1178-1379 bp Feature: gene Location: 2264-2482 bp Feature: domain Description: PHA02517 Location: 2273-2459 bp Feature: domain Description: PHA02517 Location: 2273-24 59 bp Feature: gene Location: 2780-2962 bp Feature: domain Description: InsE Location: 2795-2906 bp Feature: domain Description: InsE Location: 2795-2906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)