myRT

myRT report for GCA_003541575.1_ASM354157v1

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Seq: DPMH01000065.1 TPA_asm: Clostridium sp. isolate UBA9077 contig_1674, whole genome shotgun sequence (7829 bp)
Overview 1 RT 1: 610-5647 bp Neighborhood of RT #1 [610, 5667] RVT-Retrons RVT-Retrons GntR Feature: gene Location: 610-852 bp Feature: gene Location: 815-2587 bp Feature: gene Location: 2638-2961 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2836-2944 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2836-2944 bp Feature: gene Location: 3024-3713 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3027-3489 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3027-3489 bp Feature: gene Location: 4455-4835 bp Feature: gene Location: 5035-5667 bp Feature: domain Description: GntR Location: 5056-5647 bp Feature: domain Description: GntR Location: 5056-5647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, GntR (pfam00392)

Seq: DPMH01000130.1 TPA_asm: Clostridium sp. isolate UBA9077 contig_7136, whole genome shotgun sequence (12351 bp)
Overview 1 RT 1: 2463-7589 bp Neighborhood of RT #1 [2463, 7606] Yip1 group_II_RT_mat RVT-GII spore_pdaA Feature: gene Location: 2463-3209 bp Feature: domain Description: Yip1 Location: 2631-3153 bp Feature: domain Description: Yip1 Location: 2 631-3153 bp Feature: gene Location: 3367-3756 bp Feature: gene Location: 4248-5447 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4350-4479 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4350-4479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4479-4950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4479-4950 bp Feature: gene Location: 6094-6294 bp Feature: gene Location: 6578-7606 bp Feature: domain Description: spore_pdaA Location: 6950-7589 bp Feature: domain Description: spore_pdaA Location: 6950-7589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Yip1 (pfam04893), group_II_RT_mat (TIGR04416), RVT-GII, spore_pdaA (TIGR02884)

Seq: DPMH01000313.1 TPA_asm: Clostridium sp. isolate UBA9077 contig_857, whole genome shotgun sequence (2897 bp)
Overview 1 RT 1: 466-2216 bp Neighborhood of RT #1 [466, 2572] SR_ResInv RVT-GII Feature: gene Location: 466-1053 bp Feature: domain Description: SR_ResInv Location: 487-868 bp Feature: domain Description: SR_ResInv Location: 487-868 bp Feature: gene Location: 1046-1513 bp Feature: gene Location: 1700-2572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2051-2216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2051-2216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SR_ResInv (cd03768)

Seq: DPMH01000247.1 TPA_asm: Clostridium sp. isolate UBA9077 contig_858, whole genome shotgun sequence (7445 bp)
Overview 1 RT 1: 152-3184 bp Neighborhood of RT #1 [152, 3184] RAYT RVT-GII GIIM Feature: gene Location: 152-604 bp Feature: domain Description: RAYT Location: 164-554 bp Feature: domain Description: RAYT Location: 164 -554 bp Feature: gene Location: 769-2181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1114-1732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1114 -1732 bp Feature: domain Description: GIIM Note: maturase Location: 1786-2017 bp Feature: domain Description: GIIM Note: maturase Location: 1786-2017 bp Feature: gene Location: 2289-2486 bp Feature: gene Location: 2420-3184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), RVT-GII, GIIM (pfam08388)