myRT

myRT report for GCA_003541775.1_ASM354177v1

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Seq: DPLX01000116.1 TPA_asm: Bacteroides fragilis isolate UBA9490 contig_23313, whole genome shotgun sequence (16712 bp)
Overview 1 RT 1: 14467-16680 bp Neighborhood of RT #1 [14467, 16709] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Feature: gene Location: 14467-14640 bp Feature: domain Description: Bac_Flav_CT_G Location: 14470-14626 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 4470-1 4626 bp Feature: gene Location: 14647-14925 bp Feature: domain Description: Bac_Flav_CT_G Location: 14665-14923 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 4665-1 4923 bp Feature: gene Location: 15003-16709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15162-15984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 62-1 5984 bp Feature: domain Description: Intron_maturas2 Location: 16059-16386 bp Feature: domain Description: Intron_maturas2 Location: 1 6059-1 6386 bp Feature: domain Description: HNHc Note: nucleases Location: 16530-16680 bp Feature: domain Description: HNHc Note: nucleases Location: 1 6530-1 6680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: DPLX01000136.1 TPA_asm: Bacteroides fragilis isolate UBA9490 contig_235, whole genome shotgun sequence (109431 bp)
Overview 1 RT 1: 66244-75202 bp Neighborhood of RT #1 [66244, 75210] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 66244-68433 bp Feature: domain Description: GlnA3 Location: 66319-68431 bp Feature: domain Description: GlnA3 Location: 66319-68431 bp Feature: gene Location: 68673-70892 bp Feature: gene Location: 71099-72211 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71414-71963 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71414-71963 bp Feature: gene Location: 72353-74146 bp Feature: domain Description: rpsA Location: 72431-74039 bp Feature: domain Description: rpsA Location: 72 431-74039 bp Feature: gene Location: 74296-75210 bp Feature: domain Description: RNase_Z Location: 74311-75202 bp Feature: domain Description: RNase_Z Location: 74311-752 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: DPLX01000080.1 TPA_asm: Bacteroides fragilis isolate UBA9490 contig_52599, whole genome shotgun sequence (7076 bp)
Overview 1 RT 1: 24-3403 bp Neighborhood of RT #1 [24, 3417] RVT_N RVT-GII GIIM TDP2 Feature: gene Location: 24-1679 bp Feature: RT Description: RVT_N Location: 78-321 bp Feature: RT Description: RVT_N Location: 78-3 21 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1011 bp Feature: domain Description: GIIM Note: maturase Location: 1062-1296 bp Feature: domain Description: GIIM Note: maturase Location: 1062-1296 bp Feature: gene Location: 1753-2070 bp Feature: gene Location: 2386-3417 bp Feature: domain Description: TDP2 Location: 2461-3403 bp Feature: domain Description: TDP2 Location: 2461-3 403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TDP2 (cd09080), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)