myRT

myRT report for GCA_003542015.1_ASM354201v1

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Seq: DPLL01000529.1 TPA_asm: Microcoleaceae bacterium UBA9251 contig_270, whole genome shotgun sequence (21697 bp)
Overview 1 RT 1: 465-3844 bp Neighborhood of RT #1 [465, 3844] COG4634 RVT-UG12 BaeS Feature: gene Location: 465-617 bp Feature: domain Description: COG4634 Location: 468-603 bp Feature: domain Description: COG4634 Location: 468-603 bp Feature: gene Location: 639-800 bp Feature: gene Location: 1122-2705 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1491-1932 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 1 491 -1 932 bp Feature: gene Location: 2833-3186 bp Feature: domain Description: BaeS Location: 2857-3166 bp Feature: domain Description: BaeS Location: 2857-31 66 bp Feature: gene Location: 3497-3844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4634 (Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component ), RVT-UG12, BaeS (COG0642)

Seq: DPLL01000543.1 TPA_asm: Microcoleaceae bacterium UBA9251 contig_351, whole genome shotgun sequence (21859 bp)
Overview 1 RT 1: 13878-17578 bp Neighborhood of RT #1 [13878, 17578] CbiM PDGLE RVT_N RVT-GII GIIM McrA RVT_N Feature: gene Location: 13878-14804 bp Feature: domain Description: CbiM Location: 13884-14499 bp Feature: domain Description: CbiM Location: 13884-14499 bp Feature: domain Description: PDGLE Location: 14553-14775 bp Feature: domain Description: PDGLE Location: 14553-14775 bp Feature: gene Location: 15059-15193 bp Feature: gene Location: 15424-17019 bp Feature: domain Description: RVT_N Location: 15436-15595 bp Feature: domain Description: RVT_N Location: 15436-15595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15637-16306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15637-16306 bp Feature: domain Description: GIIM Note: maturase Location: 16405-16606 bp Feature: domain Description: GIIM Note: maturase Location: 16405-16606 bp Feature: domain Description: McrA Location: 16708-16981 bp Feature: domain Description: McrA Location: 16708-16981 bp Feature: gene Location: 16976-17194 bp Feature: domain Description: RVT_N Location: 17075-17180 bp Feature: domain Description: RVT_N Location: 17075-17180 bp Feature: gene Location: 17399-17578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CbiM (pfam01891), PDGLE (pfam13190), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: DPLL01000542.1 TPA_asm: Microcoleaceae bacterium UBA9251 contig_352, whole genome shotgun sequence (7750 bp)
Overview 1 RT 1: 5132-7703 bp Neighborhood of RT #1 [5132, 7747] PRK12519 PRK13920 Cupin_7 RVT-GII GIIM McrA Feature: gene Location: 5132-5698 bp Feature: domain Description: PRK12519 Location: 5147-5690 bp Feature: domain Description: PRK12519 Location: 5147-5690 bp Feature: gene Location: 5772-6437 bp Feature: domain Description: PRK13920 Location: 5892-6108 bp Feature: domain Description: PRK13 920 Location: 5892-6108 bp Feature: domain Description: Cupin_7 Location: 6150-6411 bp Feature: domain Description: Cupin_7 Location: 6150-6411 bp Feature: gene Location: 6704-7747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6710-7031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6710-703 1 bp Feature: domain Description: GIIM Note: maturase Location: 7133-7343 bp Feature: domain Description: GIIM Note: maturase Location: 713 3 -73 43 bp Feature: domain Description: McrA Location: 7433-7703 bp Feature: domain Description: McrA Location: 743 3 -7703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12519 (RNA polymerase sigma factor; Provisional), PRK13920 (putative anti-sigmaE protein; Provisional), Cupin_7 (pfam12973), RVT-GII, GIIM (pfam08388), McrA (COG4058)