myRT

myRT report for GCA_003542555.1_ASM354255v1

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Seq: DPKK01000041.1 TPA_asm: Prolixibacteraceae bacterium isolate UBA12401 contig_1081, whole genome shotgun sequence (302020 bp)
Overview 1 RT 1: 41776-47494 bp Neighborhood of RT #1 [41776, 47628] RVT-GII GIIM CHD Feature: gene Location: 41776-42771 bp Feature: gene Location: 43370-44194 bp Feature: gene Location: 44252-45568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44447-45062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44447-45062 bp Feature: domain Description: GIIM Note: maturase Location: 45134-45347 bp Feature: domain Description: GIIM Note: maturase Location: 451 34-45347 bp Feature: gene Location: 46032-46868 bp Feature: gene Location: 46972-47628 bp Feature: domain Description: CHD Location: 47134-47494 bp Feature: domain Description: CHD Location: 471 34-47494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: DPKK01000040.1 TPA_asm: Prolixibacteraceae bacterium isolate UBA12401 contig_304, whole genome shotgun sequence (88030 bp)
Overview 1 RT 1: 69003-79291 bp Neighborhood of RT #1 [69003, 79291] SMC_prok_B SMC_prok_B SMC_prok_B RVT-DGRs Feature: gene Location: 69003-72656 bp Feature: domain Description: SMC_prok_B Location: 69057-69564 bp Feature: domain Description: SMC_prok_B Location: 69057-69564 bp Feature: domain Description: SMC_prok_B Location: 71004-71865 bp Feature: domain Description: SMC_prok_B Location: 71004-71865 bp Feature: domain Description: SMC_prok_B Location: 71979-72615 bp Feature: domain Description: SMC_prok_B Location: 71979-72 615 bp Feature: gene Location: 72688-74406 bp Feature: gene Location: 74653-75918 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 74863-75457 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 74863-75457 bp Feature: gene Location: 75930-76124 bp Feature: gene Location: 76127-79291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_prok_B (TIGR02168), RVT-DGRs

Seq: DPKK01000011.1 TPA_asm: Prolixibacteraceae bacterium isolate UBA12401 contig_41, whole genome shotgun sequence (273387 bp)
Overview 1 RT 1: 54867-59518 bp Neighborhood of RT #1 [54867, 59532] HTH_ARSR RVT-UG2 YcjR Feature: gene Location: 54867-55196 bp Feature: domain Description: HTH_ARSR Location: 54891-55119 bp Feature: domain Description: HTH_ARSR Location: 54891-55119 bp Feature: gene Location: 55926-56063 bp Feature: gene Location: 56288-57859 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 56522-57437 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 56522-5743 7 bp Feature: gene Location: 58049-58192 bp Feature: gene Location: 58696-59532 bp Feature: domain Description: YcjR Location: 58846-59518 bp Feature: domain Description: YcjR Location: 58846-59518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), RVT-UG2, YcjR (COG1082)

Seq: DPKK01000006.1 TPA_asm: Prolixibacteraceae bacterium isolate UBA12401 contig_726, whole genome shotgun sequence (317746 bp)
Overview 1 RT 1: 189377-195025 bp Neighborhood of RT #1 [189377, 195087] DUF4099 DUF3945 DUF3945 TIR_2 RVT-GII GIIM COG1907 Feature: gene Location: 189377-190753 bp Feature: domain Description: DUF4099 Location: 189767-190013 bp Feature: domain Description: DUF4 099 Location: 189767-190013 bp Feature: domain Description: DUF3945 Location: 190109-190283 bp Feature: domain Description: DUF394 5 Location: 190109-190283 bp Feature: domain Description: DUF3945 Location: 190385-190496 bp Feature: domain Description: DUF394 5 Location: 190385-1904 96 bp Feature: gene Location: 190897-191835 bp Feature: domain Description: TIR_2 Location: 190906-191194 bp Feature: domain Description: TIR_2 Location: 190906-191194 bp Feature: gene Location: 192094-193320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192307-192961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192307-192961 bp Feature: domain Description: GIIM Note: maturase Location: 193042-193270 bp Feature: domain Description: GIIM Note: maturase Location: 19304 2-193270 bp Feature: gene Location: 193748-194110 bp Feature: gene Location: 194137-195087 bp Feature: domain Description: COG1907 Location: 194146-195025 bp Feature: domain Description: COG1907 Location: 194 14 6-195025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4099 (pfam13351), DUF3945 (pfam13101), TIR_2 (pfam13676), RVT-GII, GIIM (pfam08388), COG1907 (Predicted archaeal sugar kinase )