myRT

myRT report for GCA_003543035.1_ASM354303v1

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Seq: DPJL01000294.1 TPA_asm: Micromonosporaceae bacterium isolate UBA11056 contig_1003, whole genome shotgun sequence (12593 bp)
Overview 1 RT 1: 3945-8579 bp Neighborhood of RT #1 [3945, 8579] DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM rve Feature: gene Location: 3945-5042 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3984-4314 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 3984-431 4 bp Feature: domain Description: Transposase_20 Location: 4641-4893 bp Feature: domain Description: Transposase_20 Location: 4641 -4893 bp Feature: gene Location: 5054-5239 bp Feature: gene Location: 5276-6901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5792-6479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5792-6479 bp Feature: domain Description: GIIM Note: maturase Location: 6551-6779 bp Feature: domain Description: GIIM Note: maturase Location: 6551 -6779 bp Feature: gene Location: 7537-7992 bp Feature: domain Description: rve Location: 7723-7903 bp Feature: domain Description: rve Location: 7723-7903 bp Feature: gene Location: 8259-8579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388), rve (pfam00665)

Seq: DPJL01000041.1 TPA_asm: Micromonosporaceae bacterium isolate UBA11056 contig_1697, whole genome shotgun sequence (7266 bp)
Overview 1 RT 1: 3040-6935 bp Neighborhood of RT #1 [3040, 7093] RVT-GII RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 3040-3186 bp Feature: gene Location: 3298-3525 bp Feature: gene Location: 3713-4606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4034-4574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4034-4574 bp Feature: gene Location: 5163-6479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5379-6036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5379-6036 bp Feature: domain Description: GIIM Note: maturase Location: 6114-6336 bp Feature: domain Description: GIIM Note: maturase Location: 6114-6336 bp Feature: gene Location: 6476-7093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6509-6650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6509-6650 bp Feature: domain Description: GIIM Note: maturase Location: 6722-6935 bp Feature: domain Description: GIIM Note: maturase Location: 672 2 -6935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: DPJL01000397.1 TPA_asm: Micromonosporaceae bacterium isolate UBA11056 contig_348, whole genome shotgun sequence (125664 bp)
Overview 1 RT 1: 84346-88020 bp Neighborhood of RT #1 [84346, 88020] Flavoprotein Acetyltransf_1 APH RVT-GII GIIM Feature: gene Location: 84346-85407 bp Feature: domain Description: Flavoprotein Location: 84400-84820 bp Feature: domain Description: Flavoprotein Location: 84400-84820 bp Feature: domain Description: Acetyltransf_1 Location: 85051-85321 bp Feature: domain Description: Acetyltransf_1 Location: 85051-853 21 bp Feature: gene Location: 85404-86384 bp Feature: domain Description: APH Location: 85590-86157 bp Feature: domain Description: APH Location: 85590-86157 bp Feature: gene Location: 86466-86765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86472-86541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86472-86541 bp Feature: domain Description: GIIM Note: maturase Location: 86613-86757 bp Feature: domain Description: GIIM Note: maturase Location: 86613 -86757 bp Feature: gene Location: 86838-87173 bp Feature: gene Location: 87241-88020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Flavoprotein (pfam02441), Acetyltransf_1 (pfam00583), APH (pfam01636), RVT-GII, GIIM (pfam08388)

Seq: DPJL01000010.1 TPA_asm: Micromonosporaceae bacterium isolate UBA11056 contig_919, whole genome shotgun sequence (4820 bp)
Overview 1 RT 1: 950-4729 bp Neighborhood of RT #1 [950, 4729] InsE RVT-GII GIIM PHA02517 Feature: gene Location: 950-1264 bp Feature: domain Description: InsE Location: 959-1253 bp Feature: domain Description: InsE Location: 959-1253 bp Feature: gene Location: 1352-1642 bp Feature: gene Location: 1856-3310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2198-2888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2198-2888 bp Feature: domain Description: GIIM Note: maturase Location: 2960-3176 bp Feature: domain Description: GIIM Note: maturase Location: 2960-3176 bp Feature: gene Location: 3465-4388 bp Feature: domain Description: PHA02517 Location: 3549-4356 bp Feature: domain Description: PHA02517 Location: 354 9-4 356 bp Feature: gene Location: 4547-4729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)