myRT

myRT report for GCA_003543335.1_ASM354333v1

Download annotations/find similar RTs

Seq: DPIX01000008.1 TPA_asm: Acidobacterium sp. isolate UBA8845 contig_2103, whole genome shotgun sequence (9519 bp)
Overview 1 RT 1: 7119-9032 bp Neighborhood of RT #1 [7119, 9403] HTH_Tnp_1 Tra5 RVT-GII Feature: gene Location: 7119-7385 bp Feature: domain Description: HTH_Tnp_1 Location: 7125-7332 bp Feature: domain Description: HTH_Tnp_1 Location: 71 25-7332 bp Feature: gene Location: 7472-8308 bp Feature: domain Description: Tra5 Location: 7505-8204 bp Feature: domain Description: Tra5 Location: 7505-8204 bp Feature: gene Location: 8534-9403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8540-9032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8540-9032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), Tra5 (COG2801), RVT-GII

Seq: DPIX01000010.1 TPA_asm: Acidobacterium sp. isolate UBA8845 contig_959, whole genome shotgun sequence (24287 bp)
Overview 1 RT 1: 15863-21352 bp Neighborhood of RT #1 [15863, 21354] HTH_XRE HTH_XRE RVT-GII GIIM ADOP Feature: gene Location: 15863-16036 bp Feature: domain Description: HTH_XRE Location: 15866-15995 bp Feature: domain Description: HTH_XRE Location: 15866-15995 bp Feature: gene Location: 16116-16466 bp Feature: domain Description: HTH_XRE Location: 16164-16323 bp Feature: domain Description: HTH_XRE Location: 16164-1632 3 bp Feature: gene Location: 16758-18146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17103-17721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17103-1772 1 bp Feature: domain Description: GIIM Note: maturase Location: 17772-17988 bp Feature: domain Description: GIIM Note: maturase Location: 17772 -17988 bp Feature: gene Location: 18267-18527 bp Feature: gene Location: 18697-21354 bp Feature: domain Description: ADOP Location: 18934-21352 bp Feature: domain Description: ADOP Location: 18934-2 1352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, GIIM (pfam08388), ADOP (TIGR03434)