myRT

myRT report for GCA_003545805.1_ASM354580v1

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Seq: NMQR01000107.1 Photorhabdus sp. CRCIA-P01 scaffold107.1, whole genome shotgun sequence (4255 bp)
Overview 1 RT 1: 1-2087 bp Neighborhood of RT #1 [1, 2104] RVT-GII GIIM RVT-GII GIIM COG3636 Feature: gene Location: 1-564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169-520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 69-520 bp Feature: gene Location: 551-1021 bp Feature: domain Description: GIIM Note: maturase Location: 704-923 bp Feature: domain Description: GIIM Note: maturase Location: 704-923 bp Feature: gene Location: 1018-1374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1087-1261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 087-1 261 bp Feature: gene Location: 1404-1661 bp Feature: domain Description: GIIM Note: maturase Location: 1410-1545 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 0-1 545 bp Feature: gene Location: 1745-2104 bp Feature: domain Description: COG3636 Location: 1805-2087 bp Feature: domain Description: COG3636 Location: 1 805-2087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3636 (DNA-binding prophage protein )

Seq: NMQR01000142.1 Photorhabdus sp. CRCIA-P01 scaffold142.1, whole genome shotgun sequence (1917 bp)
Overview 1 RT 1: 103-1914 bp Neighborhood of RT #1 [103, 1914] RVT-GII KOG4768 Feature: gene Location: 103-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 487-1174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 487-1174 bp Feature: domain Description: KOG4768 Location: 1288-1399 bp Feature: domain Description: KOG4768 Location: 12 88-1399 bp Feature: gene Location: 1256-1693 bp Feature: gene Location: 1783-1914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: NMQR01000148.1 Photorhabdus sp. CRCIA-P01 scaffold148.1, whole genome shotgun sequence (1808 bp)
Overview 1 RT 1: 2-1556 bp Neighborhood of RT #1 [2, 1735] RVT-GII GIIM Feature: gene Location: 2-217 bp Feature: gene Location: 410-1735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671-1289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671-1289 bp Feature: domain Description: GIIM Note: maturase Location: 1337-1556 bp Feature: domain Description: GIIM Note: maturase Location: 13 3 7-1556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NMQR01000002.1 Photorhabdus sp. CRCIA-P01 scaffold2.1, whole genome shotgun sequence (250336 bp)
Overview 1 RT 1: 38679-44405 bp Neighborhood of RT #1 [38679, 44416] TIGR02646 COG3950 RVT-Retrons Arm-DNA-bind_3 PRK10662 Feature: gene Location: 38679-39329 bp Feature: domain Description: TIGR02646 Location: 38742-39153 bp Feature: domain Description: TIGR0264 6 Location: 3874 2-39153 bp Feature: gene Location: 39326-40984 bp Feature: domain Description: COG3950 Location: 39521-40937 bp Feature: domain Description: COG3950 Location: 39521-4 0937 bp Feature: gene Location: 40981-41916 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41083-41683 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 1083-4 1683 bp Feature: gene Location: 42162-42527 bp Feature: domain Description: Arm-DNA-bind_3 Location: 42195-42396 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4 2195-4 2396 bp Feature: gene Location: 43199-44416 bp Feature: domain Description: PRK10662 Location: 43202-44405 bp Feature: domain Description: PRK10662 Location: 4 3202-4 4 4 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, Arm-DNA-bind_3 (pfam13356), PRK10662 (beta-lactam binding protein AmpH; Provisional)

Seq: NMQR01000020.1 Photorhabdus sp. CRCIA-P01 scaffold20.1, whole genome shotgun sequence (80588 bp)
Overview 1 RT 1: 36953-42180 bp Neighborhood of RT #1 [36953, 42338] KOG4768 RVT-UG9 PRK14975 Trans_IPPS_HH Feature: gene Location: 36953-37111 bp Feature: gene Location: 37384-37626 bp Feature: domain Description: KOG4768 Location: 37405-37588 bp Feature: domain Description: KOG4768 Location: 37405 -375 88 bp Feature: gene Location: 38000-39664 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 38234-38873 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 38234-38873 bp Feature: gene Location: 39657-41207 bp Feature: domain Description: PRK14975 Location: 40128-41145 bp Feature: domain Description: PRK14975 Location: 40128-41145 bp Feature: gene Location: 41361-42338 bp Feature: domain Description: Trans_IPPS_HH Location: 41376-42180 bp Feature: domain Description: Trans_IPPS_HH Location: 41376-42180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), Trans_IPPS_HH (cd00683)

Seq: NMQR01000021.1 Photorhabdus sp. CRCIA-P01 scaffold21.1, whole genome shotgun sequence (77923 bp)
Overview 1 RT 1: 1752-17258 bp Neighborhood of RT #1 [1752, 18313] RVT-GII ESPR Haemagg_act FHA_bHelix FHA_bHelix FHA_bHelix FHA_bHelix FHA_bHelix fil_hemag_20aa fil_hemag_20aa fil_hemag_20aa fil_hemag_20aa FHA_bHelix FHA_bHelix fil_hemag_20aa fil_hemag_20aa fil_hemag_20aa fil_hemag_20aa FHA_bHelix FHA_bHelix FHA_bHelix FHA_bHelix fil_hemag_20aa FHA_bHelix fil_hemag_20aa fil_hemag_20aa fil_hemag_20aa FHA_bHelix fil_hemag_20aa FHA_bHelix Fil_haemagg_2 Fil_haemagg_2 Fil_haemagg_2 PT-VENN Feature: gene Location: 1752-1967 bp Feature: gene Location: 2021-2434 bp Feature: gene Location: 2480-2875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2483-2729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2483-2729 bp Feature: gene Location: 3049-3387 bp Feature: gene Location: 3401-18313 bp Feature: domain Description: ESPR Location: 3404-3473 bp Feature: domain Description: ESPR Location: 3404-3473 bp Feature: domain Description: Haemagg_act Location: 3623-4016 bp Feature: domain Description: Haemagg_act Location: 36 23-4016 bp Feature: domain Description: FHA_bHelix Location: 4334-4463 bp Feature: domain Description: FHA_bHelix Location: 4334-446 3 bp Feature: domain Description: FHA_bHelix Location: 4505-5114 bp Feature: domain Description: FHA_bHelix Location: 4505-5114 bp Feature: domain Description: FHA_bHelix Location: 5126-5594 bp Feature: domain Description: FHA_bHelix Location: 5126 -5594 bp Feature: domain Description: FHA_bHelix Location: 5648-6227 bp Feature: domain Description: FHA_bHelix Location: 56 48-6 227 bp Feature: domain Description: FHA_bHelix Location: 6251-6818 bp Feature: domain Description: FHA_bHelix Location: 6 251-6 818 bp Feature: domain Description: fil_hemag_20aa Location: 6836-6950 bp Feature: domain Description: fil_hemag_20aa Location: 6 836 -6 950 bp Feature: domain Description: fil_hemag_20aa Location: 6959-7061 bp Feature: domain Description: fil_hemag_20aa Location: 6 959-706 1 bp Feature: domain Description: fil_hemag_20aa Location: 7097-7214 bp Feature: domain Description: fil_hemag_20aa Location: 7097-7214 bp Feature: domain Description: fil_hemag_20aa Location: 7232-7328 bp Feature: domain Description: fil_hemag_20aa Location: 7232-7328 bp Feature: domain Description: FHA_bHelix Location: 7337-7487 bp Feature: domain Description: FHA_bHelix Location: 7337-7487 bp Feature: domain Description: FHA_bHelix Location: 7502-8012 bp Feature: domain Description: FHA_bHelix Location: 7502-8012 bp Feature: domain Description: fil_hemag_20aa Location: 8024-8132 bp Feature: domain Description: fil_hemag_20aa Location: 8024-8132 bp Feature: domain Description: fil_hemag_20aa Location: 8141-8255 bp Feature: domain Description: fil_hemag_20aa Location: 8141-8255 bp Feature: domain Description: fil_hemag_20aa Location: 8261-8339 bp Feature: domain Description: fil_hemag_20aa Location: 826 1-8339 bp Feature: domain Description: fil_hemag_20aa Location: 8342-8432 bp Feature: domain Description: fil_hemag_20aa Location: 8342-8432 bp Feature: domain Description: FHA_bHelix Location: 8441-8855 bp Feature: domain Description: FHA_bHelix Location: 8441-8855 bp Feature: domain Description: FHA_bHelix Location: 8870-9347 bp Feature: domain Description: FHA_bHelix Location: 8870-9347 bp Feature: domain Description: FHA_bHelix Location: 9359-9734 bp Feature: domain Description: FHA_bHelix Location: 9359-9734 bp Feature: domain Description: FHA_bHelix Location: 9788-10367 bp Feature: domain Description: FHA_bHelix Location: 9788-1036 7 bp Feature: domain Description: fil_hemag_20aa Location: 10427-10529 bp Feature: domain Description: fil_hemag_20aa Location: 10427-10529 bp Feature: domain Description: FHA_bHelix Location: 10541-11117 bp Feature: domain Description: FHA_bHelix Location: 10541-11117 bp Feature: domain Description: fil_hemag_20aa Location: 11207-11327 bp Feature: domain Description: fil_hemag_20aa Location: 11207-11327 bp Feature: domain Description: fil_hemag_20aa Location: 11333-11438 bp Feature: domain Description: fil_hemag_20aa Location: 11333-11438 bp Feature: domain Description: fil_hemag_20aa Location: 11456-11576 bp Feature: domain Description: fil_hemag_20aa Location: 11456 -11576 bp Feature: domain Description: FHA_bHelix Location: 11666-12257 bp Feature: domain Description: FHA_bHelix Location: 116 6 6 -12257 bp Feature: domain Description: fil_hemag_20aa Location: 12719-12812 bp Feature: domain Description: fil_hemag_20aa Location: 12719-12812 bp Feature: domain Description: FHA_bHelix Location: 14084-14522 bp Feature: domain Description: FHA_bHelix Location: 14084-14522 bp Feature: domain Description: Fil_haemagg_2 Location: 14573-14990 bp Feature: domain Description: Fil_haemagg_2 Location: 14573-14990 bp Feature: domain Description: Fil_haemagg_2 Location: 15059-15377 bp Feature: domain Description: Fil_haemagg_2 Location: 15059-15377 bp Feature: domain Description: Fil_haemagg_2 Location: 15509-16025 bp Feature: domain Description: Fil_haemagg_2 Location: 15509-16 025 bp Feature: domain Description: PT-VENN Location: 17108-17258 bp Feature: domain Description: PT-VENN Location: 17108-17258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ESPR (pfam13018), Haemagg_act (smart00912), FHA_bHelix (sd00046), fil_hemag_20aa (TIGR01731), Fil_haemagg_2 (pfam13332), PT-VENN (pfam04829)

Seq: NMQR01000023.1 Photorhabdus sp. CRCIA-P01 scaffold23.1, whole genome shotgun sequence (74902 bp)
Overview 1 RT 1: 3-1997 bp Neighborhood of RT #1 [3, 1997] RVT-GII Feature: gene Location: 3-254 bp Feature: gene Location: 438-1154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 642-1128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 642-1128 bp Feature: gene Location: 1454-1702 bp Feature: gene Location: 1824-1997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NMQR01000061.1 Photorhabdus sp. CRCIA-P01 scaffold61.1, whole genome shotgun sequence (18333 bp)
Overview 1 RT 1: 3-1632 bp Neighborhood of RT #1 [3, 1652] COG3547 RVT-GII ParE ParD Feature: gene Location: 3-257 bp Feature: domain Description: COG3547 Location: 6-219 bp Feature: domain Description: COG3547 Location: 6-219 bp Feature: gene Location: 480-608 bp Feature: gene Location: 795-1025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 858-957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 58 -957 bp Feature: gene Location: 1087-1245 bp Feature: domain Description: ParE Location: 1093-1222 bp Feature: domain Description: ParE Location: 1093-1222 bp Feature: gene Location: 1401-1652 bp Feature: domain Description: ParD Location: 1404-1632 bp Feature: domain Description: ParD Location: 1404-1632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, ParE (COG3668), ParD (pfam09386)

Seq: NMQR01000065.1 Photorhabdus sp. CRCIA-P01 scaffold65.1, whole genome shotgun sequence (16109 bp)
Overview 1 RT 1: 3533-10429 bp Neighborhood of RT #1 [3533, 10434] PRK10347 RVT-UG3 RVT-UG8 PRK09692 Feature: gene Location: 3533-4117 bp Feature: domain Description: PRK10347 Location: 3536-4115 bp Feature: domain Description: PRK10347 Location: 3536-4115 bp Feature: gene Location: 5328-5615 bp Feature: gene Location: 6653-7915 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 6938-7439 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 69 38-7439 bp Feature: gene Location: 7908-9860 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 8436-8889 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 8436-8889 bp Feature: gene Location: 9955-10146 bp Feature: gene Location: 10204-10434 bp Feature: domain Description: PRK09692 Location: 10210-10429 bp Feature: domain Description: PRK09 69 2 Location: 10210-10429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10347 (putative adenosine monophosphate-protein transferase Fic), RVT-UG3, RVT-UG8, PRK09692 (Integrase; provisional)

Seq: NMQR01000095.1 Photorhabdus sp. CRCIA-P01 scaffold95.1, whole genome shotgun sequence (5349 bp)
Overview 1 RT 1: 2-4558 bp Neighborhood of RT #1 [2, 4558] RVT-GII GIIM RVT-GII Feature: gene Location: 2-181 bp Feature: gene Location: 581-811 bp Feature: gene Location: 1801-3210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2155-2812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2155-2812 bp Feature: domain Description: GIIM Note: maturase Location: 2893-3112 bp Feature: domain Description: GIIM Note: maturase Location: 2893-3112 bp Feature: gene Location: 3042-3494 bp Feature: gene Location: 3588-4304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3792-4278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3792-4278 bp Feature: gene Location: 4415-4558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)