myRT

myRT report for GCA_003546095.1_ASM354609v1

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Seq: QXNR01000023.1 Escherichia coli strain HR167 Contig_23, whole genome shotgun sequence (76069 bp)
Overview 1 RT 1: 22081-25964 bp Neighborhood of RT #1 [22081, 25969] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 22081-22797 bp Feature: domain Description: rph Location: 22084-22792 bp Feature: domain Description: rph Location: 22084-22792 bp Feature: gene Location: 22849-23505 bp Feature: domain Description: pyrE Location: 22867-23500 bp Feature: domain Description: pyrE Location: 22867-23500 bp Feature: gene Location: 23803-24762 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23938-24487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23938-24487 bp Feature: gene Location: 24808-25404 bp Feature: domain Description: slmA Location: 24814-25390 bp Feature: domain Description: slmA Location: 2481 4-25390 bp Feature: gene Location: 25511-25969 bp Feature: domain Description: dut Location: 25517-25964 bp Feature: domain Description: dut Location: 2551 7-25964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: QXNR01000069.1 Escherichia coli strain HR167 Contig_69, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 97-2226 bp Neighborhood of RT #1 [97, 2226] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 97-1764 bp Feature: RT Description: RVT_N Location: 145-382 bp Feature: RT Description: RVT_N Location: 145-382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1075 bp Feature: domain Description: GIIM Note: maturase Location: 1126-1360 bp Feature: domain Description: GIIM Note: maturase Location: 112 6-1360 bp Feature: domain Description: HNHc Note: nucleases Location: 1570-1729 bp Feature: domain Description: HNHc Note: nucleases Location: 1570-172 9 bp Feature: gene Location: 2044-2226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)