myRT

myRT report for GCA_003546115.1_ASM354611v1

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Seq: QXNS01000022.1 Escherichia coli strain HR166 Contig_22, whole genome shotgun sequence (75656 bp)
Overview 1 RT 1: 22097-25980 bp Neighborhood of RT #1 [22097, 25985] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 22097-22813 bp Feature: domain Description: rph Location: 22100-22808 bp Feature: domain Description: rph Location: 221 00-22808 bp Feature: gene Location: 22865-23521 bp Feature: domain Description: pyrE Location: 22883-23516 bp Feature: domain Description: pyrE Location: 22883-2351 6 bp Feature: gene Location: 23819-24778 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23954-24503 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23954-24503 bp Feature: gene Location: 24824-25420 bp Feature: domain Description: slmA Location: 24830-25406 bp Feature: domain Description: slmA Location: 24830-25406 bp Feature: gene Location: 25527-25985 bp Feature: domain Description: dut Location: 25533-25980 bp Feature: domain Description: dut Location: 25533-25980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: QXNS01000068.1 Escherichia coli strain HR166 Contig_68, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 83-2212 bp Neighborhood of RT #1 [83, 2212] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1750 bp Feature: RT Description: RVT_N Location: 131-368 bp Feature: RT Description: RVT_N Location: 131-368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1061 bp Feature: domain Description: GIIM Note: maturase Location: 1112-1346 bp Feature: domain Description: GIIM Note: maturase Location: 1112 -1346 bp Feature: domain Description: HNHc Note: nucleases Location: 1556-1715 bp Feature: domain Description: HNHc Note: nucleases Location: 1556-1715 bp Feature: gene Location: 2030-2212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)