myRT

myRT report for GCA_003546145.1_ASM354614v1

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Seq: QXNT01000023.1 Escherichia coli strain HR165 Contig_23, whole genome shotgun sequence (76650 bp)
Overview 1 RT 1: 22089-25972 bp Neighborhood of RT #1 [22089, 25977] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 22089-22805 bp Feature: domain Description: rph Location: 22092-22800 bp Feature: domain Description: rph Location: 22092-22800 bp Feature: gene Location: 22857-23513 bp Feature: domain Description: pyrE Location: 22875-23508 bp Feature: domain Description: pyrE Location: 22875-23508 bp Feature: gene Location: 23811-24770 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23946-24495 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23946-24495 bp Feature: gene Location: 24816-25412 bp Feature: domain Description: slmA Location: 24822-25398 bp Feature: domain Description: slmA Location: 24822-25398 bp Feature: gene Location: 25519-25977 bp Feature: domain Description: dut Location: 25525-25972 bp Feature: domain Description: dut Location: 25525-25972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: QXNT01000006.1 Escherichia coli strain HR165 Contig_6, whole genome shotgun sequence (289530 bp)
Overview 1 RT 1: 248478-252457 bp Neighborhood of RT #1 [248478, 252579] PRK15414 RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 248478-249794 bp Feature: domain Description: PRK15414 Location: 248481-249786 bp Feature: domain Description: PRK15414 Location: 2 48481-2 49786 bp Feature: gene Location: 249906-250103 bp Feature: gene Location: 250119-251786 bp Feature: RT Description: RVT_N Location: 250167-250404 bp Feature: RT Description: RVT_N Location: 2 50167-2 50404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250455-251097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 50455-2 51097 bp Feature: domain Description: GIIM Note: maturase Location: 251148-251382 bp Feature: domain Description: GIIM Note: maturase Location: 2 51148-2 51382 bp Feature: domain Description: HNHc Note: nucleases Location: 251592-251751 bp Feature: domain Description: HNHc Note: nucleases Location: 2 51592 -2 51751 bp Feature: gene Location: 251827-252105 bp Feature: gene Location: 252157-252579 bp Feature: domain Description: DUF1380 Location: 252160-252457 bp Feature: domain Description: DUF1380 Location: 2 52 160-2 52 457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15414 (phosphomannomutase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)