myRT

myRT report for GCA_003546185.1_ASM354618v1

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Seq: QXNP01000024.1 Escherichia coli strain HR170 Contig_24, whole genome shotgun sequence (76072 bp)
Overview 1 RT 1: 22081-25964 bp Neighborhood of RT #1 [22081, 25969] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 22081-22797 bp Feature: domain Description: rph Location: 22084-22792 bp Feature: domain Description: rph Location: 22084-22792 bp Feature: gene Location: 22849-23505 bp Feature: domain Description: pyrE Location: 22867-23500 bp Feature: domain Description: pyrE Location: 22867-23500 bp Feature: gene Location: 23803-24762 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23938-24487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23938-24487 bp Feature: gene Location: 24808-25404 bp Feature: domain Description: slmA Location: 24814-25390 bp Feature: domain Description: slmA Location: 2481 4-25390 bp Feature: gene Location: 25511-25969 bp Feature: domain Description: dut Location: 25517-25964 bp Feature: domain Description: dut Location: 2551 7-25964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: QXNP01000039.1 Escherichia coli strain HR170 Contig_39, whole genome shotgun sequence (25638 bp)
Overview 1 RT 1: 2-2857 bp Neighborhood of RT #1 [2, 2979] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 162 4-1858 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2 068-2 2 2 7 bp Feature: gene Location: 2369-2560 bp Feature: gene Location: 2557-2979 bp Feature: domain Description: DUF1380 Location: 2560-2857 bp Feature: domain Description: DUF1380 Location: 2 560-2 857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)