myRT

myRT report for GCA_003546205.1_ASM354620v1

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Seq: QXNQ01000011.1 Escherichia coli strain HR169 Contig_11, whole genome shotgun sequence (180133 bp)
Overview 1 RT 1: 22081-25964 bp Neighborhood of RT #1 [22081, 25969] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 22081-22797 bp Feature: domain Description: rph Location: 22084-22792 bp Feature: domain Description: rph Location: 22084-22792 bp Feature: gene Location: 22849-23505 bp Feature: domain Description: pyrE Location: 22867-23500 bp Feature: domain Description: pyrE Location: 22867-23500 bp Feature: gene Location: 23803-24762 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23938-24487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23938-24487 bp Feature: gene Location: 24808-25404 bp Feature: domain Description: slmA Location: 24814-25390 bp Feature: domain Description: slmA Location: 2481 4-25390 bp Feature: gene Location: 25511-25969 bp Feature: domain Description: dut Location: 25517-25964 bp Feature: domain Description: dut Location: 2551 7-25964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: QXNQ01000031.1 Escherichia coli strain HR169 Contig_31, whole genome shotgun sequence (40054 bp)
Overview 1 RT 1: 3-2986 bp Neighborhood of RT #1 [3, 3108] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 3-152 bp Feature: gene Location: 602-2269 bp Feature: RT Description: RVT_N Location: 650-887 bp Feature: RT Description: RVT_N Location: 650-887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 938-1580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 938-1580 bp Feature: domain Description: GIIM Note: maturase Location: 1631-1865 bp Feature: domain Description: GIIM Note: maturase Location: 1631-1865 bp Feature: domain Description: HNHc Note: nucleases Location: 2075-2234 bp Feature: domain Description: HNHc Note: nucleases Location: 2 075-2 2 34 bp Feature: gene Location: 2498-2689 bp Feature: gene Location: 2686-3108 bp Feature: domain Description: DUF1380 Location: 2689-2986 bp Feature: domain Description: DUF1380 Location: 2 689-2 986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)