myRT

myRT report for GCA_003546225.1_ASM354622v1

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Seq: QXNU01000040.1 Escherichia coli strain HR164 Contig_40, whole genome shotgun sequence (26590 bp)
Overview 1 RT 1: 624-4507 bp Neighborhood of RT #1 [624, 4512] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 624-1082 bp Feature: domain Description: dut Location: 630-1077 bp Feature: domain Description: dut Location: 630-1 077 bp Feature: gene Location: 1189-1785 bp Feature: domain Description: slmA Location: 1195-1771 bp Feature: domain Description: slmA Location: 1 1 95-1 771 bp Feature: gene Location: 1831-2790 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1966-2515 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 966-251 5 bp Feature: gene Location: 3088-3744 bp Feature: domain Description: pyrE Location: 3106-3739 bp Feature: domain Description: pyrE Location: 31 06-3739 bp Feature: gene Location: 3796-4512 bp Feature: domain Description: rph Location: 3799-4507 bp Feature: domain Description: rph Location: 3799-4507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576)

Seq: QXNU01000075.1 Escherichia coli strain HR164 Contig_75, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 95-2224 bp Neighborhood of RT #1 [95, 2224] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 95-1762 bp Feature: RT Description: RVT_N Location: 143-380 bp Feature: RT Description: RVT_N Location: 143-380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1073 bp Feature: domain Description: GIIM Note: maturase Location: 1124-1358 bp Feature: domain Description: GIIM Note: maturase Location: 112 4-1358 bp Feature: domain Description: HNHc Note: nucleases Location: 1568-1727 bp Feature: domain Description: HNHc Note: nucleases Location: 1568-172 7 bp Feature: gene Location: 2042-2224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)